{"id":"W2898615051","doi":"10.1038/s41598-018-34812-x","title":"A complete Leishmania donovani reference genome identifies novel genetic variations associated with virulence","year":2018,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Biology; Genome; Gene; Leishmania donovani; Genetics; DNA sequencing; Sequence assembly; Reference genome; Whole genome sequencing; Gene Annotation; Computational biology; Genome project; Visceral leishmaniasis; Leishmaniasis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005643966,0.0006887945,0.0008576151,0.00156822,0.0004693848,0.00072939,0.0005731723,0.0007621058,0.002325914],"category_scores_gemma":[0.001283043,0.000338668,0.000812561,0.002056704,0.0002126396,0.0003454237,0.0005552433,0.0008749077,0.001542804],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004567484,"about_ca_system_score_gemma":0.0007792213,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00332682,"about_ca_topic_score_gemma":0.004820229,"domain_scores_codex":[0.9995998,0.00006354841,0.00003704424,0.0001222618,0.0001128415,0.00006452983],"domain_scores_gemma":[0.999453,0.00009963902,0.00008069106,0.00009983325,0.0002122724,0.00005458398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001026119,0.0001869872,0.01113183,0.001179805,0.0001367346,0.001048657,0.0003170165,0.003438334,0.9076039,0.001402806,0.005883724,0.06664407],"study_design_scores_gemma":[0.0003702919,0.001339726,0.2689999,0.0007866301,0.001382086,0.005704167,0.0006899607,0.02233577,0.3735877,0.002983713,0.3215799,0.0002400364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8013316,0.01265709,0.09687637,0.00115982,0.000427311,0.0003451979,0.07497201,0.002710928,0.009519546],"genre_scores_gemma":[0.5874553,0.006001419,0.1355244,0.0004764256,0.0001003435,0.0004121859,0.263812,0.000821471,0.005396389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00332682,"threshold_uncertainty_score":0.007780969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05988162054337379,"score_gpt":0.3035851191627365,"score_spread":0.2437034986193627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}