{"id":"W2898885544","doi":"10.1177/1040638718810744","title":"Validation of an in-house real-time PCR fecal assay and comparison with two commercial assays for the antemortem detection of <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> infection in culled sheep","year":2018,"lang":"en","type":"article","venue":"Journal of Veterinary Diagnostic Investigation","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Paratuberculosis; Feces; Biology; Real-time polymerase chain reaction; Flock; Enteritis; Ileum; Microbiology; Polymerase chain reaction; Mycobacterium; Virology; Veterinary medicine; Medicine; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002055461,0.0002003162,0.0006136332,0.0004318841,0.00008812544,0.00003932353,0.00009919237,0.0001359018,0.00001195065],"category_scores_gemma":[0.001694666,0.0001491148,0.00008757964,0.0004814028,0.0003204507,0.0005712108,0.00003457224,0.0003081814,0.000001693387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001524504,"about_ca_system_score_gemma":0.0001940278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008626923,"about_ca_topic_score_gemma":0.000455243,"domain_scores_codex":[0.997515,0.000557888,0.00101252,0.0002105753,0.0004550181,0.0002490249],"domain_scores_gemma":[0.9959921,0.002137078,0.0007946524,0.0002258756,0.0006684811,0.0001818368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003218677,0.0004802134,0.5086824,0.000275719,0.00005885922,0.00002665605,0.0006844673,0.0001374783,0.4842381,0.000009048611,0.00009837023,0.002090003],"study_design_scores_gemma":[0.004189901,0.01210043,0.7421585,0.000842948,0.000234429,0.0003440866,0.00008489544,0.0044611,0.2353434,0.00007409004,0.00003642227,0.0001298425],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977252,0.00007041964,0.000707793,0.0003228493,0.0002136784,0.0008983726,0.00001519783,0.00001554527,0.00003095956],"genre_scores_gemma":[0.9981328,0.0003724808,0.0009637478,0.00006405869,0.0003399852,0.00005701437,0.00003501119,0.00003315405,0.00000179653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2488948,"threshold_uncertainty_score":0.6080723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03342213061578342,"score_gpt":0.3207535670468366,"score_spread":0.2873314364310532,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}