{"id":"W2899032005","doi":"10.1007/s10482-018-1188-4","title":"A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera","year":2018,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Polyphyly; Type genus; Evolutionary biology; Phylogenetics; Clade; Genus; Phylum; Genetics; Type species; Zoology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001305039,0.0008358856,0.0006010704,0.003556397,0.001846101,0.002605797,0.001578345,0.0008845073,0.002072169],"category_scores_gemma":[0.001905528,0.0003049384,0.0007138695,0.001971939,0.002209309,0.002690341,0.001710798,0.002557442,0.001132147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00114313,"about_ca_system_score_gemma":0.001385598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00199044,"about_ca_topic_score_gemma":0.002147869,"domain_scores_codex":[0.9995128,0.0001164489,0.00006117676,0.0001437076,0.00008691389,0.00007912271],"domain_scores_gemma":[0.9989229,0.0001312933,0.0002380629,0.0001162877,0.0003688919,0.0002225537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001431993,0.0006799684,0.1230131,0.002105243,0.0005301084,0.002453746,0.008360384,0.01790455,0.2996268,0.08179431,0.005856861,0.4562429],"study_design_scores_gemma":[0.0002598972,0.002466841,0.4339307,0.001854747,0.0007666718,0.006457961,0.01569389,0.1185956,0.01785146,0.1886237,0.2130804,0.0004181126],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.524115,0.0121566,0.425298,0.006901273,0.0008501251,0.001150792,0.002682241,0.0009891652,0.02585689],"genre_scores_gemma":[0.6664144,0.005211131,0.3173635,0.001549051,0.000302945,0.0003752101,0.004552871,0.0001542006,0.004076744],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003556397,"threshold_uncertainty_score":0.008293986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01689527062253341,"score_gpt":0.259047969176712,"score_spread":0.2421526985541786,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}