{"id":"W2899054342","doi":"10.1128/mra.01473-18","title":"Draft Genome Sequences of Eight <i>Vibrio</i> sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Centers for Disease Control and Prevention; Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Vibrio cholerae; Biology; Clade; Monophyly; Genome; Phylogenetic tree; Lineage (genetic); Cholera; Vibrio; Genetics; Evolutionary biology; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005819596,0.0003760842,0.0005466134,0.00006842147,0.0002259971,0.00008030867,0.0009408892,0.000326978,0.0001175462],"category_scores_gemma":[0.00007264166,0.0002635887,0.0002269265,0.0002128323,0.0006502251,0.00001433733,0.001234117,0.0002955241,0.0001822407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004355725,"about_ca_system_score_gemma":0.00007917218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002735758,"about_ca_topic_score_gemma":0.0001377624,"domain_scores_codex":[0.9971704,0.0003553103,0.0006549297,0.0008258011,0.0001443509,0.0008491936],"domain_scores_gemma":[0.9984149,0.0001377849,0.0002791006,0.0008380774,0.0001980805,0.0001320597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006231149,0.00009457114,0.07453388,0.00002338326,0.0004578049,0.000002581044,0.0009720118,0.00005385329,0.9184284,5.402965e-7,0.004712821,0.0000970069],"study_design_scores_gemma":[0.001389203,0.001066377,0.01458149,0.00005026335,0.00003105087,0.000008167732,0.001205647,0.00001470362,0.09011589,0.00001254287,0.891175,0.0003497138],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919721,0.0009849707,0.00006946697,0.001379236,0.0002074214,0.0006944729,0.004532585,0.0000158041,0.0001439466],"genre_scores_gemma":[0.975265,0.0007366573,0.0002721047,0.007122405,0.0003114459,0.00006352558,0.01444715,0.00005394085,0.001727742],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8864622,"threshold_uncertainty_score":0.9999816,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02351669254511349,"score_gpt":0.3069436324754704,"score_spread":0.2834269399303569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}