{"id":"W2899054342","doi":"10.1128/mra.01473-18","title":"Draft Genome Sequences of Eight <i>Vibrio</i> sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Centers for Disease Control and Prevention; Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Vibrio cholerae; Biology; Clade; Monophyly; Genome; Phylogenetic tree; Lineage (genetic); Cholera; Vibrio; Genetics; Evolutionary biology; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004632924,0.000463118,0.0004377438,0.001446926,0.0005705674,0.0007290332,0.0003528987,0.0004487613,0.00335947],"category_scores_gemma":[0.001336419,0.0003513041,0.0005937729,0.001985593,0.0001678852,0.0002992087,0.0003843397,0.0007359624,0.001256107],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006459022,"about_ca_system_score_gemma":0.002774091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02195674,"about_ca_topic_score_gemma":0.04045607,"domain_scores_codex":[0.9997532,0.0000330572,0.00004219432,0.00006706643,0.00006702391,0.00003753051],"domain_scores_gemma":[0.9992579,0.000118435,0.0001923386,0.00004660232,0.0002962425,0.00008848712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002545002,0.0002911267,0.08101248,0.003699505,0.0004298654,0.001893879,0.003360066,0.002992272,0.7718368,0.001521729,0.04659521,0.08382216],"study_design_scores_gemma":[0.000380468,0.0006370173,0.6756328,0.001044261,0.001102529,0.00155338,0.003788776,0.004938344,0.04773398,0.001144272,0.2619448,0.00009937258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5213706,0.002910729,0.007763424,0.001399332,0.0002498456,0.0003203074,0.4599124,0.0007885831,0.005284733],"genre_scores_gemma":[0.2161291,0.001550618,0.03242654,0.0002790782,0.00004804304,0.000252584,0.7462963,0.0001757109,0.002841897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02195674,"threshold_uncertainty_score":0.0436579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02351669254511349,"score_gpt":0.3069436324754704,"score_spread":0.2834269399303569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}