{"id":"W2899231457","doi":"10.3390/v10110595","title":"Comparative Genomics and Characterization of the Late Promoter pR’ from Shiga Toxin Prophages in Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Viruses","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency","keywords":"Prophage; Shiga toxin; Escherichia coli; Biology; Gene; Genetics; Promoter; Transcription (linguistics); Reporter gene; Bacteriophage; Molecular biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007664481,0.00008792981,0.0001277272,0.00001644512,0.00005269501,0.00001623487,0.0001197541,0.00005524587,0.000008250639],"category_scores_gemma":[0.00004265687,0.00006203746,0.00001738747,0.00008983832,0.0002794093,0.000006338149,0.0002139519,0.0000585021,0.00000258341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009180233,"about_ca_system_score_gemma":0.00005550701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000817368,"about_ca_topic_score_gemma":0.0002577898,"domain_scores_codex":[0.9994317,0.00009143757,0.0001281481,0.0001566321,0.00007331047,0.000118813],"domain_scores_gemma":[0.9996663,0.00001101505,0.00007202749,0.0001650089,0.00006410012,0.00002152282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007987476,0.00004131587,0.01743774,0.000009492478,0.00003457515,2.220963e-7,0.0006659761,5.496754e-7,0.981554,0.000008611079,0.00003577076,0.0001318971],"study_design_scores_gemma":[0.0001714257,0.0001117397,0.3035737,0.00001318281,0.000004276663,9.366678e-8,0.00004194518,0.00005333088,0.6933675,0.00002241051,0.002587216,0.00005310823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999079,0.00021197,0.00001979831,0.00009562355,0.00004625122,0.0003241135,0.00005364114,0.000003914497,0.0001656669],"genre_scores_gemma":[0.9990668,0.0001969641,0.0001968462,0.0002337669,0.00009289474,0.00002846735,0.00001190395,0.000008632441,0.0001636933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2881864,"threshold_uncertainty_score":0.2529814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02921024441506726,"score_gpt":0.2911004197851538,"score_spread":0.2618901753700865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}