{"id":"W2899231457","doi":"10.3390/v10110595","title":"Comparative Genomics and Characterization of the Late Promoter pR’ from Shiga Toxin Prophages in Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Viruses","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency","keywords":"Prophage; Shiga toxin; Escherichia coli; Biology; Gene; Genetics; Promoter; Transcription (linguistics); Reporter gene; Bacteriophage; Molecular biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002068058,0.0002826712,0.0002968501,0.00043963,0.0001198174,0.0003939521,0.0002357718,0.0002347221,0.0002645928],"category_scores_gemma":[0.000310798,0.0001958614,0.0005327784,0.0004142032,0.0001782218,0.0001802408,0.0002105299,0.0006363413,0.0003061129],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002872577,"about_ca_system_score_gemma":0.0002883631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001363614,"about_ca_topic_score_gemma":0.001064499,"domain_scores_codex":[0.9998574,0.00002586688,0.0000161526,0.00002397502,0.00004386077,0.00003266205],"domain_scores_gemma":[0.999723,0.00007611962,0.00007000494,0.00002947913,0.00004709785,0.00005432388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007123508,0.00001725506,0.0002466442,0.00002147643,0.000003617063,0.00004669127,0.00002393266,0.00005914077,0.998822,0.00003738223,0.000005109173,0.0006456087],"study_design_scores_gemma":[0.00002991619,0.000690668,0.05604123,0.00002481578,0.00007221305,0.001155772,0.0002272392,0.001761941,0.9366558,0.0001393589,0.003175299,0.00002570331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931321,0.0005266928,0.004992683,0.00005347254,0.00001234595,0.00003545311,0.0007292051,0.00002232347,0.0004958188],"genre_scores_gemma":[0.9844447,0.0006552366,0.008204694,0.00009141059,0.00001552892,0.00004994778,0.005244991,0.00005177941,0.001241723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001363614,"threshold_uncertainty_score":0.002711415,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02921024441506726,"score_gpt":0.2911004197851538,"score_spread":0.2618901753700865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}