{"id":"W2899473693","doi":"10.1139/cjb-2018-0052","title":"Transcriptome profiling of rice roots in early response to <i>Bacillus</i> <i>subtilis</i> (RR4) colonization","year":2018,"lang":"en","type":"article","venue":"Botany","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Bacillus subtilis; Transcriptome; Chitinase; Rhizosphere; Colonization; Bacteria; Secondary metabolite; Botany; Metabolome; Raphanus; Oryza sativa; Plant defense against herbivory; Gene; Microbiology; Plant physiology; Gene expression; Metabolite; Biochemistry; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003427341,0.00009007862,0.0001342621,0.00002640528,0.0001029561,0.00002896838,0.000185423,0.00006674272,0.00008141178],"category_scores_gemma":[0.0001178109,0.00004236863,0.00004052628,0.0006002781,0.00004273035,0.0001552122,0.00003138745,0.0000953035,0.00005830867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003491821,"about_ca_system_score_gemma":0.00001158182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007860091,"about_ca_topic_score_gemma":0.001196159,"domain_scores_codex":[0.9991522,0.000133395,0.0002376299,0.0001716279,0.0001109863,0.0001941639],"domain_scores_gemma":[0.999552,0.0001403688,0.00006103934,0.00006383593,0.0001278135,0.00005495132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005993337,0.00008106262,0.003194052,0.000002349442,0.000003153805,0.000001851526,0.0002344443,9.5194e-7,0.9946142,0.00001223001,0.0002613755,0.0009949805],"study_design_scores_gemma":[0.0001741551,0.0006108762,0.7008408,0.00004892013,0.000004557866,0.000008232798,0.0002193639,0.00002432112,0.2722725,0.0000246962,0.02564436,0.0001272633],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983073,0.00004398553,0.00001727642,0.0005426773,0.0001602917,0.0002075361,0.0001007092,0.0000290109,0.0005912108],"genre_scores_gemma":[0.9991901,0.000007234753,0.0001764047,0.0002518956,0.00005253319,0.0000100305,0.000006283305,9.956404e-7,0.0003045341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7223417,"threshold_uncertainty_score":0.1727743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01713214312351749,"score_gpt":0.2337528146375751,"score_spread":0.2166206715140576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}