{"id":"W2899473693","doi":"10.1139/cjb-2018-0052","title":"Transcriptome profiling of rice roots in early response to <i>Bacillus</i> <i>subtilis</i> (RR4) colonization","year":2018,"lang":"en","type":"article","venue":"Botany","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Bacillus subtilis; Transcriptome; Chitinase; Rhizosphere; Colonization; Bacteria; Secondary metabolite; Botany; Metabolome; Raphanus; Oryza sativa; Plant defense against herbivory; Gene; Microbiology; Plant physiology; Gene expression; Metabolite; Biochemistry; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001004391,0.0003397377,0.0007521313,0.0002963877,0.0003058398,0.0004370871,0.0001249797,0.0003138848,0.000824241],"category_scores_gemma":[0.0001139909,0.0002458104,0.0005597328,0.0003903586,0.0002022557,0.0002557893,0.0002934909,0.0006977215,0.0004984218],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003530087,"about_ca_system_score_gemma":0.0003811413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002227121,"about_ca_topic_score_gemma":0.002340357,"domain_scores_codex":[0.9998602,0.000007623479,0.000006177268,0.00005914835,0.0000292341,0.00003763123],"domain_scores_gemma":[0.9999083,0.00001328519,0.00002128229,0.000005694146,0.0000281001,0.00002318266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001438044,0.000009150423,0.0006693718,0.00005098515,0.000005729006,0.00002997374,0.00004926306,0.00003293881,0.9982457,0.00001762563,0.00006979531,0.000675767],"study_design_scores_gemma":[0.00005617673,0.0008155403,0.4973259,0.00005619902,0.0001669151,0.000639269,0.0008593703,0.003005455,0.4884658,0.0002446464,0.008290214,0.00007444344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984821,0.00224908,0.002651344,0.0001779269,0.00006284511,0.00005157482,0.007450536,0.000200137,0.002335604],"genre_scores_gemma":[0.9681087,0.001843952,0.004759976,0.0005753313,0.00005031954,0.00023442,0.01473899,0.0001424347,0.009546027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002227121,"threshold_uncertainty_score":0.004428327,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01713214312351749,"score_gpt":0.2337528146375751,"score_spread":0.2166206715140576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}