{"id":"W2900048179","doi":"10.1186/s12866-018-1324-3","title":"Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Plant Pathogen Control","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Key Research and Development Program of China; Earmarked Fund for Modern Agro-industry Technology Research System; Agriculture and Agri-Food Canada; Yangzhou University","keywords":"Biology; Conidiation; Alternaria solani; Alternaria brassicicola; Genome; Gene; Virulence; Genetics; Whole genome sequencing; Pathosystem; Genome project; Fungal protein; Blight; Botany; Arabidopsis; Peptide sequence; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003534093,0.0001361528,0.0002228541,0.000008752821,0.0001746895,0.00001742248,0.0003354418,0.0001359191,0.0000670288],"category_scores_gemma":[0.0001849421,0.00005075835,0.00008239367,0.00009937063,0.000217365,0.00005764528,0.0001076825,0.00006276935,0.00002921921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001703419,"about_ca_system_score_gemma":0.00002031959,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002073736,"about_ca_topic_score_gemma":0.0005348534,"domain_scores_codex":[0.998892,0.0001812433,0.000272127,0.0003320831,0.00003870843,0.0002838315],"domain_scores_gemma":[0.9990787,0.0004279007,0.0002243335,0.00008714796,0.0001391126,0.00004279746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007488712,0.00001290751,0.01003352,0.00001549299,0.000009726306,4.524043e-7,0.00005798156,6.98629e-7,0.9892557,0.0001906082,0.00008480798,0.0002632786],"study_design_scores_gemma":[0.001066249,0.001865684,0.2935815,0.00009077146,0.0001011542,0.0003614332,0.0001674335,0.000313744,0.68379,0.00102812,0.01698135,0.0006526186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956801,0.0009149714,0.00002845951,0.00018084,0.0003056608,0.0005758567,0.002259439,0.00002062986,0.00003406087],"genre_scores_gemma":[0.9987163,0.000033505,0.0002201576,0.0003801668,0.000283084,0.00002465677,0.0001168004,0.000001382061,0.0002239276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3054657,"threshold_uncertainty_score":0.2069866,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02908648346578459,"score_gpt":0.2288956262602388,"score_spread":0.1998091427944542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}