{"id":"W2900291180","doi":"10.1038/s41522-018-0070-5","title":"Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome","year":2018,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Amgen (Canada); University of Guelph; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; Alberta Livestock and Meat Agency; Ministry of Agriculture, Food and Rural Affairs; Dalhousie University; Ontario Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Microbiome; Biology; Taxon; Identification (biology); Lactobacillus; Metagenomics; Computational biology; Evolutionary biology; Microbiology; Ecology; Bioinformatics; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003471888,0.0003628502,0.0002728179,0.0001073729,0.0004121798,0.00009232459,0.0003044879,0.0003151017,0.0001216933],"category_scores_gemma":[0.00003411329,0.0002353714,0.0001361691,0.0002146986,0.00052165,0.000005588599,0.0002146513,0.0001853324,0.0002520542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002147527,"about_ca_system_score_gemma":0.00007190244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006764013,"about_ca_topic_score_gemma":0.00007176634,"domain_scores_codex":[0.9983334,0.0001211885,0.0002590018,0.0006214306,0.00007841846,0.0005865553],"domain_scores_gemma":[0.9991015,0.00003839147,0.0001030796,0.0005268902,0.00008389179,0.0001462728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001441351,0.00005524927,0.0006174915,0.0000350872,0.00006718866,0.000002409437,0.0000969851,4.11648e-8,0.9648891,0.0001629244,0.03068338,0.003245985],"study_design_scores_gemma":[0.0007094833,0.001290962,0.003601582,0.00004111791,0.00002297125,0.00009685697,0.00003414235,0.000001331624,0.6917611,0.000009653632,0.3021515,0.0002793545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943697,0.00103286,0.00001357839,0.001484353,0.0004069135,0.0004637559,0.0001869857,0.00003316431,0.002008667],"genre_scores_gemma":[0.9917305,0.0002858197,0.000184186,0.003978735,0.0005609984,0.00001952259,0.000189485,0.0000451631,0.003005551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.273128,"threshold_uncertainty_score":0.9598169,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007079882068434925,"score_gpt":0.2401991963130036,"score_spread":0.2331193142445686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}