{"id":"W2900291180","doi":"10.1038/s41522-018-0070-5","title":"Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome","year":2018,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Amgen (Canada); University of Guelph; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; Alberta Livestock and Meat Agency; Ministry of Agriculture, Food and Rural Affairs; Dalhousie University; Ontario Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Microbiome; Biology; Taxon; Identification (biology); Lactobacillus; Metagenomics; Computational biology; Evolutionary biology; Microbiology; Ecology; Bioinformatics; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005983171,0.0002962866,0.0003442086,0.0004642312,0.0002739686,0.0009955083,0.0001048215,0.0003351443,0.0009507069],"category_scores_gemma":[0.0005050864,0.0001536251,0.0003451673,0.0004130566,0.0002495923,0.0002431561,0.000544522,0.0003173635,0.0001508203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003212944,"about_ca_system_score_gemma":0.0003160826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001241928,"about_ca_topic_score_gemma":0.002157054,"domain_scores_codex":[0.9996608,0.0001221016,0.00002643532,0.00005599791,0.00008637871,0.00004817742],"domain_scores_gemma":[0.9997001,0.00006790342,0.00009665151,0.00002703614,0.00005963642,0.00004880565],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005670347,0.00006585046,0.02317222,0.0004029813,0.0001866196,0.00007699697,0.00006337319,0.0002415643,0.9679272,0.00008752,0.0001379462,0.007070763],"study_design_scores_gemma":[0.00004939575,0.002547604,0.5831693,0.0002167565,0.0006725414,0.0004538555,0.001190348,0.002283591,0.4024177,0.0004193184,0.006542195,0.00003735982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963344,0.001630357,0.000687972,0.0001137934,0.00001663635,0.00001343286,0.0003014936,0.00001841891,0.0008834476],"genre_scores_gemma":[0.9980789,0.0005044767,0.000821099,0.00008919271,0.000006015368,0.000008857016,0.000200701,0.000005118905,0.0002855629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001241928,"threshold_uncertainty_score":0.003180385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007079882068434925,"score_gpt":0.2401991963130036,"score_spread":0.2331193142445686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}