{"id":"W2900608547","doi":"10.1007/978-1-4939-8944-7_15","title":"Genotyping-by-Sequencing on the Ion Torrent Platform in Barley","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"","keywords":"Genome; Reference genome; Biology; Genotyping; Ion semiconductor sequencing; Genetics; Personal genomics; DNA sequencing; Genome project; Cancer genome sequencing; Computational biology; Single-nucleotide polymorphism; SNP array; Whole genome sequencing; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001878964,0.0008115005,0.001306131,0.0007591437,0.0009465863,0.0008847261,0.0009946944,0.0008314862,0.001886278],"category_scores_gemma":[0.001498385,0.0008488051,0.001410536,0.0008982196,0.0004105109,0.0004538554,0.0007482208,0.0009294213,0.00267066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005388958,"about_ca_system_score_gemma":0.000981682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004846063,"about_ca_topic_score_gemma":0.01061229,"domain_scores_codex":[0.9980561,0.0003823386,0.0001725924,0.0007889927,0.0003728308,0.0002271316],"domain_scores_gemma":[0.9990032,0.0001885871,0.0001602661,0.0003513856,0.0001577619,0.0001387821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004773204,0.00005407483,0.002405643,0.0002338156,0.0001379434,0.0002237845,0.0002599531,0.0008750763,0.9669973,0.0004339128,0.002145425,0.02575565],"study_design_scores_gemma":[0.0002149523,0.0007733216,0.08869986,0.0001124273,0.000661213,0.002082187,0.000236564,0.01980172,0.8187395,0.00235803,0.06613396,0.0001862817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3773905,0.001912379,0.5654344,0.0003016088,0.0004270826,0.001437208,0.03582856,0.01007308,0.007195196],"genre_scores_gemma":[0.3804307,0.001492699,0.5491126,0.0005685916,0.0001085436,0.001285826,0.04998966,0.004679137,0.01233228],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004846063,"threshold_uncertainty_score":0.009937048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04770238840547023,"score_gpt":0.3367445345588287,"score_spread":0.2890421461533585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}