{"id":"W2901345918","doi":"10.1101/471110","title":"Acquired interbacterial defense systems protect against interspecies antagonism in the human gut microbiome","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Life Sciences Research Foundation; Burroughs Wellcome Fund","keywords":"Biology; Microbiome; Antagonism; Gene; Genome; Human microbiome; Computational biology; Genetics; Toxin; Microbiology; Receptor","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002073682,0.0001849817,0.000208467,0.0003183527,0.0002076107,0.000481813,0.0000908295,0.0002749727,0.002442539],"category_scores_gemma":[0.0003156153,0.00007344937,0.000148805,0.0001780333,0.0002168858,0.0001488152,0.0004080482,0.0003424145,0.0003402144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001280073,"about_ca_system_score_gemma":0.0001787745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002777655,"about_ca_topic_score_gemma":0.0003189703,"domain_scores_codex":[0.9998152,0.00004122357,0.000009985318,0.00004748249,0.00003488963,0.00005119462],"domain_scores_gemma":[0.9997662,0.00002636874,0.0000845196,0.00002467049,0.00002856747,0.00006971702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004206343,0.00006433722,0.04527783,0.00007759114,0.00003639118,0.0001409511,0.00009875804,0.000102887,0.9439012,0.0002390265,0.0001590524,0.009481332],"study_design_scores_gemma":[0.00005668529,0.001594747,0.6270208,0.00005369573,0.0001056066,0.002576568,0.001055766,0.001210557,0.3591286,0.0009228335,0.006253042,0.00002115143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974988,0.0008805443,0.0006976412,0.00009736002,0.000008526864,0.000006144048,0.0001284312,0.00001907576,0.0006633702],"genre_scores_gemma":[0.9986248,0.0001649879,0.0006764891,0.0000432516,0.000009347929,0.000003722163,0.00009733801,0.000003335008,0.0003766995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002442539,"threshold_uncertainty_score":0.008171082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02907456123235578,"score_gpt":0.2708285475485592,"score_spread":0.2417539863162034,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}