{"id":"W2901582520","doi":"10.1101/474692","title":"Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Fish Ecology and Management Studies","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Fisheries and Oceans Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Royal Society; Directorate for Biological Sciences; Fisheries and Oceans Canada; Pacific Salmon Foundation; Mitacs; Genome British Columbia","keywords":"Smoltification; Biology; Oncorhynchus; Chinook wind; Ecotype; Gene expression; Gene expression profiling; Salmo; Gene; Zoology; Fishery; Ecology; Genetics; Salmonidae; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002640724,0.0002657505,0.0003476324,0.000649976,0.000356075,0.0003493027,0.0001363588,0.0002002518,0.000694939],"category_scores_gemma":[0.0002446612,0.0001390477,0.0003124454,0.0006500258,0.0002107932,0.0001506424,0.0003675408,0.0002298904,0.0001690412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002178961,"about_ca_system_score_gemma":0.0003610123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004561226,"about_ca_topic_score_gemma":0.009682307,"domain_scores_codex":[0.9998017,0.00001372566,0.00001411581,0.00009050389,0.00004808684,0.00003198991],"domain_scores_gemma":[0.999791,0.00003513289,0.00005533905,0.00001214249,0.00008104122,0.00002539615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002813826,0.00003957237,0.2129138,0.000145811,0.0000896343,0.00005855829,0.0002852732,0.000200536,0.7768168,0.00005372888,0.0001645997,0.008950341],"study_design_scores_gemma":[0.000005676944,0.0001742962,0.974813,0.00001339092,0.00007808035,0.00006961572,0.0003373933,0.0005989232,0.02285988,0.00003343571,0.001007666,0.000008755628],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966074,0.000267142,0.0009417137,0.00002235204,0.000006511586,0.00002176793,0.00173452,0.00001581518,0.0003828109],"genre_scores_gemma":[0.9895815,0.0002696117,0.002872295,0.00009109862,0.000008475237,0.0001209315,0.0057573,0.00001950899,0.001279391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004561226,"threshold_uncertainty_score":0.009069324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01086081821151979,"score_gpt":0.2106569868615641,"score_spread":0.1997961686500443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}