{"id":"W2901663682","doi":"10.1186/s13756-018-0437-7","title":"Investigation of a Carbapenemase-producing Acinetobacter baumannii outbreak using whole genome sequencing versus a standard epidemiologic investigation","year":2018,"lang":"en","type":"article","venue":"Antimicrobial Resistance and Infection Control","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Ste. Anne's Hospital; University of Northern British Columbia; Manitoba Beekeepers' Association; University of Manitoba","funders":"Fonds de Recherche du Québec - Santé","keywords":"Concordance; Outbreak; Whole genome sequencing; Pulsed-field gel electrophoresis; Acinetobacter baumannii; Transmission (telecommunications); Acinetobacter; Medicine; Genome; Biology; Virology; Genetics; Genotype; Computer science; Internal medicine; Bacteria; Gene; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004863529,0.0004970822,0.0003788099,0.002035679,0.0003384608,0.001180069,0.0004982929,0.0004556932,0.00057617],"category_scores_gemma":[0.007248133,0.000272408,0.0003939936,0.001271678,0.0007123302,0.001011553,0.000908452,0.0003412266,0.00009349869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006427692,"about_ca_system_score_gemma":0.0005699389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001849655,"about_ca_topic_score_gemma":0.003578207,"domain_scores_codex":[0.9963504,0.00135337,0.0004540677,0.0007545031,0.0008819529,0.0002057184],"domain_scores_gemma":[0.992709,0.002319821,0.002435462,0.0004570495,0.001690702,0.0003879467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004860778,0.0001426124,0.9708837,0.0001847701,0.0002239619,0.0004089459,0.0003955459,0.0005993634,0.01330768,0.0001481731,0.0001613865,0.01305775],"study_design_scores_gemma":[0.00003004414,0.001139136,0.9697769,0.0001094345,0.0002303963,0.002254535,0.001473609,0.008829042,0.01495319,0.0003778462,0.0007926267,0.00003321656],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957194,0.0002631379,0.003117651,0.00004731188,0.000008426749,0.00006676494,0.0001278832,0.00001706659,0.0006323667],"genre_scores_gemma":[0.9945997,0.0002265066,0.00476823,0.00005919505,0.00001412758,0.00003065626,0.0002323074,0.000004529771,0.00006487988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004863529,"threshold_uncertainty_score":0.02572113,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02961240521720541,"score_gpt":0.2671481301583156,"score_spread":0.2375357249411102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}