{"id":"W2902369044","doi":"10.1101/479048","title":"Towards the new normal: Transcriptomic and genomic changes in the two subgenomes of a 100,000 years old allopolyploid, <i>Capsella bursa-pastoris</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Vetenskapsrådet","keywords":"Biology; Transcriptome; Gene; Genome; Genetics; Selfing; Outcrossing; Evolutionary biology; Gene expression; Botany; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009414078,0.0002447387,0.0001498573,0.0001928208,0.0001476681,0.0005649565,0.0001688713,0.000464545,0.0004474911],"category_scores_gemma":[0.0001649091,0.0001356014,0.0002782633,0.0002168989,0.0002422268,0.0005066234,0.0002244068,0.000644899,0.0001853674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003405959,"about_ca_system_score_gemma":0.0001556095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001290183,"about_ca_topic_score_gemma":0.001589608,"domain_scores_codex":[0.9999295,0.000003265707,0.000004141032,0.00004444418,0.00001053896,0.000008034578],"domain_scores_gemma":[0.9998828,0.00001285724,0.00003936166,0.00001601007,0.0000185742,0.00003036034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005217818,0.000003691491,0.001853048,0.0000274735,0.000005426642,0.00004390844,0.00005904893,0.00002166031,0.9965836,0.00004962617,0.00002352102,0.001276731],"study_design_scores_gemma":[0.00001512398,0.0003137247,0.7385425,0.00003789549,0.00008975412,0.001379492,0.0006017744,0.0009335048,0.246411,0.0004080853,0.01123363,0.00003345822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960533,0.001183549,0.001213041,0.000206954,0.00001992543,0.000004894569,0.0006717959,0.00004946495,0.0005969597],"genre_scores_gemma":[0.9922796,0.0007873234,0.002186674,0.0003587219,0.00001836087,0.00001319022,0.002627345,0.00003809915,0.001690719],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001290183,"threshold_uncertainty_score":0.002565384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01677231846956688,"score_gpt":0.2048969744163253,"score_spread":0.1881246559467584,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}