{"id":"W2902436222","doi":"10.1101/483180","title":"Medroxyprogesterone acetate mediated alteration in the vaginal microbiota and microenvironment in a Kenyan sex worker cohort","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Public Health; University of Toronto; University Health Network; Population Health Research Institute; Université Laval; Mount Sinai Hospital; University of Manitoba; McMaster University; Public Health Ontario; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"Medroxyprogesterone acetate; Biology; Bacterial vaginosis; Physiology; Vagina; Vaginal flora; Immunology; Microbiology; Hormone; Endocrinology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001616863,0.0002932747,0.0001769343,0.0003461536,0.000874581,0.0003535859,0.0002397959,0.0004138906,0.002440419],"category_scores_gemma":[0.0003152791,0.000268012,0.0001732452,0.0003473306,0.0002272846,0.0001878576,0.0003144059,0.0004172672,0.0003449027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002922422,"about_ca_system_score_gemma":0.0003064841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009666564,"about_ca_topic_score_gemma":0.01095142,"domain_scores_codex":[0.9998789,0.00001778799,0.000005948993,0.00003722708,0.00002507133,0.00003506782],"domain_scores_gemma":[0.9998852,0.00001045763,0.00003379573,0.000009897729,0.00001667837,0.00004387006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004771641,0.0001081131,0.9890406,0.00003021602,0.00002866498,0.0008097679,0.0004830082,0.00001220245,0.005541753,0.00002832678,0.000332678,0.003107402],"study_design_scores_gemma":[0.000007798662,0.0002538233,0.9976998,0.00001110131,0.00001670796,0.0008133243,0.0004549644,0.00002800896,0.0002515062,0.00001166818,0.0004472258,0.000004110786],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989008,0.0001882481,0.00004377787,0.00004128127,0.000004295257,0.00001704636,0.0004044004,0.00000172088,0.0003983901],"genre_scores_gemma":[0.9988588,0.0001624586,0.00007384505,0.00004195055,0.000005671599,0.00001700684,0.0002345869,0.000001898085,0.0006037766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009666564,"threshold_uncertainty_score":0.01922059,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259091807472894,"score_gpt":0.2372618929298924,"score_spread":0.2246709748551634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}