{"id":"W2902605984","doi":"10.1093/ofid/ofy210.1089","title":"1256. New Acquisitions of ET-12 Burkholderia cenocepacia in Adults With Cystic Fibrosis: Role of Whole Genome Sequencing in Outbreak Investigation","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; Hospital for Sick Children","funders":"","keywords":"Multilocus sequence typing; Burkholderia cepacia complex; Burkholderia cenocepacia; Outbreak; Whole genome sequencing; Typing; Cystic fibrosis; Medicine; Genotype; Population; Biology; Genome; Genetics; Microbiology; Virology; Burkholderia; Gene; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001233591,0.0002945466,0.0002162321,0.0006566782,0.0002440805,0.0007835422,0.0002055755,0.0003508697,0.0006264159],"category_scores_gemma":[0.00207997,0.0001528502,0.0001785668,0.0006867491,0.0001859692,0.0004029778,0.0003188252,0.0002436242,0.0001419936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003196854,"about_ca_system_score_gemma":0.0003671596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009911035,"about_ca_topic_score_gemma":0.01198089,"domain_scores_codex":[0.9995639,0.000115417,0.00007024952,0.000111629,0.00008907208,0.0000496081],"domain_scores_gemma":[0.9988258,0.0003310059,0.0003038967,0.00007147318,0.0003004092,0.0001673616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001980454,0.00005590797,0.9582884,0.00009459224,0.00002648618,0.0006418842,0.0004121312,0.0006146008,0.01361019,0.00006178376,0.0004794917,0.02551648],"study_design_scores_gemma":[0.00001454848,0.0002169609,0.983886,0.00006878936,0.00004978227,0.001719283,0.001033764,0.004627131,0.006483319,0.00009161768,0.001794462,0.00001437433],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967032,0.0003531055,0.001249764,0.0001425931,0.000007634444,0.00004612425,0.0006823093,0.00002676288,0.0007885325],"genre_scores_gemma":[0.9942972,0.0002702491,0.004341095,0.00008097558,0.00001129532,0.00001130319,0.0008438369,0.000007967575,0.0001360859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009911035,"threshold_uncertainty_score":0.01970667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01166343074855064,"score_gpt":0.2825247343925019,"score_spread":0.2708613036439512,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}