{"id":"W2902605984","doi":"10.1093/ofid/ofy210.1089","title":"1256. New Acquisitions of ET-12 Burkholderia cenocepacia in Adults With Cystic Fibrosis: Role of Whole Genome Sequencing in Outbreak Investigation","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; Hospital for Sick Children","funders":"","keywords":"Multilocus sequence typing; Burkholderia cepacia complex; Burkholderia cenocepacia; Outbreak; Whole genome sequencing; Typing; Cystic fibrosis; Medicine; Genotype; Population; Biology; Genome; Genetics; Microbiology; Virology; Burkholderia; Gene; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001835718,0.0002011174,0.0004802774,0.0004011649,0.00006896543,0.00005138416,0.0002101284,0.00006719257,0.0001981453],"category_scores_gemma":[0.0005353122,0.0001797988,0.00006040108,0.0007302554,0.0003266193,0.0006070749,0.0001926703,0.0001406774,0.00002054359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000370972,"about_ca_system_score_gemma":0.00119055,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007969736,"about_ca_topic_score_gemma":0.0104683,"domain_scores_codex":[0.9982559,0.0001089632,0.0004963176,0.000367308,0.0003659326,0.0004055798],"domain_scores_gemma":[0.9987199,0.0001454252,0.0002231155,0.0003958051,0.0002231616,0.0002926275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002980918,0.0004610601,0.827633,0.0006050526,0.00008153835,0.00002289012,0.002611073,0.0008312126,0.1619031,0.0007549447,0.0002668074,0.001848402],"study_design_scores_gemma":[0.007146169,0.00436505,0.9572706,0.004623736,0.0001084957,0.00004540457,0.003680535,0.0008307784,0.01275698,0.008491389,0.000339941,0.0003409403],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934644,0.0005936064,0.0001582495,0.0002941002,0.00003241925,0.00136684,0.0002073606,0.00003789533,0.003845141],"genre_scores_gemma":[0.9978845,0.00002663959,0.001425652,0.0001570494,0.00004427444,0.000111994,0.0002158451,0.00003528017,0.00009879647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1491461,"threshold_uncertainty_score":0.9986363,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01166343074855064,"score_gpt":0.2825247343925019,"score_spread":0.2708613036439512,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}