{"id":"W2902802075","doi":"10.1080/01635581.2018.1540715","title":"Butyrate-Induced<i>In Vitro</i>Colonocyte Differentiation Network Model Identifies<i>ITGB1, SYK, CDKN2A, CHAF1A,</i>and<i>LRP1</i>as the Prognostic Markers for Colorectal Cancer Recurrence","year":2018,"lang":"en","type":"article","venue":"Nutrition and Cancer","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Indian Council of Medical Research","keywords":"Colorectal cancer; Butyrate; CDKN2A; Biology; Gene; Cancer research; Microarray; Adenomatous polyposis coli; Microarray analysis techniques; Cancer; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002024772,0.0001725609,0.0001616158,0.00002799605,0.0002467059,0.00008030748,0.0001143922,0.000172333,0.00001248061],"category_scores_gemma":[0.00001725322,0.0001324257,0.00005295651,0.00009457667,0.0001355494,0.00001521202,0.0000720126,0.0001170394,0.000001553192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000347841,"about_ca_system_score_gemma":0.00008173074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001145783,"about_ca_topic_score_gemma":0.0007901568,"domain_scores_codex":[0.9990055,0.00003700484,0.0002469084,0.0002977254,0.00009157243,0.0003213005],"domain_scores_gemma":[0.9995245,0.00002579348,0.000131311,0.0001297511,0.0001156146,0.00007298147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.007315971,0.0003944074,0.005198241,0.0009068997,0.000412096,0.000002033036,0.001606688,0.001040614,0.7596651,0.001117422,0.05078107,0.1715595],"study_design_scores_gemma":[0.0129016,0.001984555,0.01644011,0.001293156,0.0005025742,0.0000569435,0.0007555403,0.527786,0.3382812,0.01438808,0.08333569,0.002274618],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897276,0.00541245,0.001715315,0.001155448,0.0005823773,0.001079352,0.0001597888,0.00001229949,0.0001553982],"genre_scores_gemma":[0.9884262,0.008028555,0.0002167094,0.00114299,0.0007492383,0.00103644,0.0001231698,0.0000178867,0.0002587792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5267454,"threshold_uncertainty_score":0.5400163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01319339910585341,"score_gpt":0.2653705562422883,"score_spread":0.2521771571364348,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}