{"id":"W2903415377","doi":"10.1371/journal.ppat.1007473","title":"The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection","year":2018,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Fundação para a Ciência e a Tecnologia; Ministère de l'Education Nationale, de l'Enseignement Superieur et de la Recherche; Institut National de la Santé et de la Recherche Médicale; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Virulence; Biofilm; Burkholderia cepacia complex; Galleria mellonella; Zebrafish; Burkholderia; Gene; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003931217,0.0002108253,0.0004548034,0.0001173924,0.000220568,0.00002542085,0.0001380228,0.0001562902,0.0001299155],"category_scores_gemma":[0.0002479056,0.0001676691,0.0002010529,0.0002765336,0.0003434938,0.0001740904,0.00003985111,0.0001702576,0.00001285986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001116056,"about_ca_system_score_gemma":0.0002291784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004051274,"about_ca_topic_score_gemma":0.0001014176,"domain_scores_codex":[0.9979846,0.000136864,0.00040688,0.0004349286,0.0006523401,0.0003844196],"domain_scores_gemma":[0.9978222,0.0002763177,0.0002243736,0.0005434026,0.000959702,0.0001739865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003293899,0.0002461936,0.001289994,0.0002718351,0.0005011454,0.000002726156,0.001656322,0.00001302913,0.9912978,0.00002805591,0.0004072751,0.0009917602],"study_design_scores_gemma":[0.002203755,0.001113357,0.0276982,0.0002698647,0.000588907,0.000006821,0.000182718,0.01017366,0.9570159,0.0001628695,0.0004186121,0.0001653032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9630868,0.0001807262,0.03239664,0.001466054,0.0002072068,0.001778543,0.0008071472,0.00003622144,0.00004067801],"genre_scores_gemma":[0.9977283,0.00005842361,0.001530139,0.0001216994,0.0003104644,0.00009666954,0.00003332247,0.0000373267,0.00008359363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03464158,"threshold_uncertainty_score":0.6837347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01914579406718971,"score_gpt":0.2780181348251641,"score_spread":0.2588723407579744,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}