{"id":"W2903685457","doi":"10.1371/journal.pbio.2006893","title":"Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration","year":2018,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Child Health and Human Development; National Institute of General Medical Sciences; Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; University of Oregon","keywords":"Biology; Zebrafish; Aeromonas veronii; Experimental evolution; Adaptation (eye); Host (biology); Danio; Population; Evolutionary biology; Genetics; Aeromonas; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033008,0.0004974586,0.0003180996,0.000265935,0.0003487642,0.0003167454,0.000532535,0.0004970839,0.001429235],"category_scores_gemma":[0.0004148032,0.0002347897,0.0004548506,0.0001700426,0.0006416671,0.0003170898,0.0008275928,0.001471637,0.0001909011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00101358,"about_ca_system_score_gemma":0.0006491888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004533348,"about_ca_topic_score_gemma":0.01025732,"domain_scores_codex":[0.9995802,0.00004966207,0.00004532438,0.0001102072,0.0001167712,0.00009785203],"domain_scores_gemma":[0.9995782,0.00009248791,0.0001134258,0.00006719911,0.00004346694,0.0001052611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001208048,0.00006301083,0.0005728132,0.00001878016,0.000003646998,0.0000387679,0.00004149486,0.00005974075,0.9984936,0.00005733285,0.00001891571,0.000511103],"study_design_scores_gemma":[0.00007780506,0.006282587,0.04442418,0.00002395338,0.00005003925,0.0002227965,0.0001960075,0.002285297,0.9443693,0.0001341263,0.00189071,0.00004330157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982254,0.0001007204,0.0007789622,0.00005638284,0.00001359128,0.0000524635,0.0001796132,0.00001995847,0.0005729543],"genre_scores_gemma":[0.9910855,0.000231738,0.004228439,0.0001283657,0.00001039456,0.0002376443,0.0004432805,0.00003653214,0.003598],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004533348,"threshold_uncertainty_score":0.009013951,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01503833918432259,"score_gpt":0.2434149719803853,"score_spread":0.2283766327960627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}