{"id":"W2903840915","doi":"10.1111/1755-0998.12978","title":"Intraspecific DNA contamination distorts subtle population structure in a marine fish: Decontamination of herring samples before restriction‐site associated sequencing and its effects on population genetic statistics","year":2018,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Division of Graduate Education; Washington Sea Grant, University of Washington; Natural Sciences and Engineering Research Council of Canada; U.S. Geological Survey; California Department of Fish and Wildlife; University of Washington; National Oceanic and Atmospheric Administration; Washington Department of Fish and Wildlife; National Science Foundation","keywords":"Biology; Herring; Contamination; Population; Pacific herring; Intraspecific competition; Genotype; DNA profiling; Zoology; Ecology; Genetics; Clupea; DNA; Fishery; Gene; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001266562,0.0001394859,0.0001897188,0.0001211624,0.0001744087,0.00001309588,0.00007353279,0.0001329485,0.00007723476],"category_scores_gemma":[0.0002107435,0.000156981,0.00001931065,0.0001708353,0.0001088039,0.00009634857,0.0001404847,0.00009713249,0.00000654363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008349267,"about_ca_system_score_gemma":0.000001607333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008709792,"about_ca_topic_score_gemma":0.0132272,"domain_scores_codex":[0.9988689,0.0001651151,0.0002466773,0.0003131232,0.0002223605,0.0001838557],"domain_scores_gemma":[0.9995212,0.00009996848,0.0002258257,0.0001037273,0.00001348705,0.00003577502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001787046,0.00002664721,0.9796682,0.00001837273,0.00001544711,0.00001392271,0.0008845108,0.0004507387,0.0152233,0.00002969767,0.00001029865,0.003640984],"study_design_scores_gemma":[0.0003778109,0.0003445774,0.991934,0.00002378027,0.0000323643,0.000002982256,0.0000774969,0.0007760363,0.005838467,0.0004593005,0.00001143823,0.0001217267],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993464,0.00001316973,0.00006623061,0.00003051324,0.0000898847,0.0003391604,0.00005828679,0.00001803372,0.00003827556],"genre_scores_gemma":[0.9985132,0.00001288428,0.001113098,0.00005844548,0.00001738269,0.000007641368,0.0002478683,0.0000115088,0.00001800778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01235622,"threshold_uncertainty_score":0.7381087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005331454209281548,"score_gpt":0.1921042694255188,"score_spread":0.1867728152162373,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}