{"id":"W2903905840","doi":"10.1101/492116","title":"CaptureSeq: Hybridization-based enrichment of <i>cpn60</i> gene fragments reveals the community structures of synthetic and natural microbial ecosystems","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Research Council (Canada); Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"","keywords":"Metagenomics; Microbiome; Biology; Amplicon; Microbial ecology; Microbial population biology; Computational biology; Shotgun sequencing; Environmental DNA; DNA sequencing; Gene; Genetics; Bacteria; Ecology; Biodiversity; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006760403,0.0008775026,0.0005295416,0.0007500327,0.0005976357,0.000860068,0.000518117,0.0005437132,0.002008017],"category_scores_gemma":[0.0007987246,0.0004235324,0.0006606313,0.0004672498,0.0005224922,0.0003670218,0.0007153078,0.0007828489,0.001137882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005599929,"about_ca_system_score_gemma":0.0005129945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001519144,"about_ca_topic_score_gemma":0.002733051,"domain_scores_codex":[0.9989649,0.0001277465,0.00006636844,0.0003481662,0.0003694994,0.0001233456],"domain_scores_gemma":[0.9996044,0.00009831809,0.00007795624,0.0000426257,0.0001277507,0.00004900605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005765762,0.00002647014,0.0009311794,0.00003717005,0.0000109149,0.00001547062,0.00002707536,0.0001999648,0.9959905,0.00009459245,0.0002663553,0.002342708],"study_design_scores_gemma":[0.0000136863,0.0002024864,0.01451458,0.0000195981,0.00003762485,0.0001295998,0.00008979344,0.007281173,0.9715008,0.0001616336,0.006015304,0.00003368108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8148788,0.0005649397,0.1647706,0.0004278935,0.0001456757,0.0003519824,0.01035395,0.002105883,0.006400226],"genre_scores_gemma":[0.7406908,0.0009952175,0.206919,0.001218182,0.0001085568,0.0008605123,0.03578604,0.001033326,0.01238846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002008017,"threshold_uncertainty_score":0.006717503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008533353664668961,"score_gpt":0.2087536476902372,"score_spread":0.2002202940255683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}