{"id":"W2903924351","doi":"10.4102/ajlm.v7i2.761","title":"Antimicrobial resistance surveillance with whole genome sequencing in Africa: It’s (about) time","year":2018,"lang":"en","type":"article","venue":"African Journal of Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre for Global Health Research; University of Toronto","funders":"","keywords":"Whole genome sequencing; Antibiotic resistance; Public health; Medicine; Antimicrobial; Family medicine; Genome; Biology; Pathology; Microbiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008138997,0.0006515945,0.0005614201,0.001392824,0.0006457157,0.002876656,0.0007399516,0.002217077,0.002377169],"category_scores_gemma":[0.01834304,0.0003025918,0.0003802866,0.001408781,0.001181315,0.004084575,0.001431795,0.002914119,0.0004522245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001240902,"about_ca_system_score_gemma":0.004012065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009852917,"about_ca_topic_score_gemma":0.01142247,"domain_scores_codex":[0.9971808,0.001138076,0.0002347377,0.0003300359,0.000522709,0.0005936495],"domain_scores_gemma":[0.9890644,0.003654202,0.001210585,0.0005642165,0.003331018,0.002175634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006217845,0.0001648768,0.1189812,0.00206615,0.0003141261,0.001406345,0.003136471,0.0009586788,0.01109923,0.007812082,0.1697606,0.6836785],"study_design_scores_gemma":[0.0001619168,0.0006366246,0.2199814,0.01144548,0.0004150613,0.00360447,0.01354194,0.001654063,0.004482166,0.0223394,0.7214887,0.0002489201],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.1028279,0.2500511,0.01022099,0.6067713,0.01462633,0.0001133066,0.002825736,0.0004835475,0.01207987],"genre_scores_gemma":[0.5495803,0.2819844,0.02664013,0.1218944,0.01356997,0.0001843431,0.001983102,0.0002833454,0.003880158],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.009852917,"threshold_uncertainty_score":0.04304367,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01532970057876717,"score_gpt":0.2411488617146615,"score_spread":0.2258191611358943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}