{"id":"W2903928977","doi":"10.1186/s12866-018-1363-9","title":"Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genes","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Université de Montréal; Cegep de Saint Hyacinthe","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Biology; Benzalkonium chloride; Prophage; Listeria monocytogenes; Microbiology; Efflux; Persistence (discontinuity); Genome; Typing; Gene; Multiplex polymerase chain reaction; Listeria; Pathogen; Polymerase chain reaction; Genetics; Bacteria; Escherichia coli; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003960175,0.0002783632,0.0004175744,0.00009476634,0.00008015162,0.00001594189,0.0008796355,0.0002722739,0.00002486566],"category_scores_gemma":[0.00007783712,0.0002184201,0.0001393061,0.0001967454,0.0004065885,0.00001131834,0.0006224142,0.00006777093,0.000009821215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003521151,"about_ca_system_score_gemma":0.0001150272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003383433,"about_ca_topic_score_gemma":0.0008421724,"domain_scores_codex":[0.998082,0.0002613378,0.0006110839,0.0006241345,0.00004712515,0.0003743041],"domain_scores_gemma":[0.99826,0.00005555182,0.0004197026,0.001008092,0.0002056884,0.00005097768],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001273777,0.00003776745,0.02351873,0.0000821878,0.00004910987,3.773672e-7,0.001028375,0.000008713453,0.9737232,0.00001407448,0.00009886583,0.0001648048],"study_design_scores_gemma":[0.0003532647,0.0003182239,0.03989744,0.00006607781,0.00001793751,0.00001871864,0.0001515646,0.00001330366,0.9429725,0.00002246045,0.01594536,0.000223168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99595,0.001192789,0.0009453162,0.0002712375,0.0004620574,0.0006140724,0.0005017478,0.00001036243,0.00005238317],"genre_scores_gemma":[0.9967738,0.0004991833,0.001282119,0.0004877773,0.0002762612,0.00005462207,0.0001518746,0.00003724416,0.0004371413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03075073,"threshold_uncertainty_score":0.8906913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07168349666498741,"score_gpt":0.2821203817321356,"score_spread":0.2104368850671481,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}