{"id":"W290393995","doi":"10.1016/j.ymeth.2015.05.001","title":"Proteomics methods for discovering viral–host interactions","year":2015,"lang":"en","type":"review","venue":"Methods","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; Cancer Research Society","keywords":"Proteomics; Computational biology; Biology; Host (biology); Host factors; Virology; Virus; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001679392,0.0005640239,0.001652408,0.0001239395,0.0001912257,0.00009810671,0.0006899559,0.0004364417,0.0001190796],"category_scores_gemma":[0.000551597,0.0004987532,0.0007755666,0.0002368881,0.00006967082,0.0001531596,0.0003290187,0.0008616647,0.00001300082],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004784316,"about_ca_system_score_gemma":0.0002582535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001245573,"about_ca_topic_score_gemma":9.950693e-7,"domain_scores_codex":[0.9976655,0.0002651035,0.0008617393,0.0007190724,0.0000897606,0.0003988488],"domain_scores_gemma":[0.9969145,0.0009780334,0.0007141865,0.001103023,0.0001324753,0.000157747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004985594,0.0000337061,3.960366e-8,0.005711426,0.00008288639,2.669139e-7,0.0000228323,0.000001320477,0.002526555,0.002280228,0.000230222,0.9891055],"study_design_scores_gemma":[0.00009156739,0.00001345347,3.274785e-9,0.002040082,0.0005002905,0.00002794629,0.00001469108,0.0002245299,0.01359389,0.01292742,0.9700386,0.0005275041],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[4.736793e-8,0.4540322,0.5413093,0.00001444638,0.0001080692,0.001003441,0.0001750363,0.0001802121,0.003177261],"genre_scores_gemma":[3.37278e-9,0.4644421,0.5261309,0.000009175384,0.0002546013,0.006382306,0.0001597889,0.0001106802,0.002510482],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.988578,"threshold_uncertainty_score":0.9997464,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1584630271637401,"score_gpt":0.5620138466117155,"score_spread":0.4035508194479754,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}