{"id":"W2904121990","doi":"10.1093/cid/ciy762","title":"Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility","year":2018,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Women's Health In Women's Hands; McMaster University; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Bacterial vaginosis; Ex vivo; Medicine; Immune system; Human immunodeficiency virus (HIV); Immunology; Microbiome; Virology; Microbiology; In vivo; Biology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000696503,0.0003294046,0.000634621,0.0001427527,0.0006834901,0.00005578468,0.0002389369,0.0002390555,0.004064625],"category_scores_gemma":[0.001126842,0.0002050433,0.0006187928,0.0002446637,0.003426787,0.0001083392,0.0001665386,0.0003618867,0.0003108834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002754858,"about_ca_system_score_gemma":0.0002546532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001631101,"about_ca_topic_score_gemma":0.0001783051,"domain_scores_codex":[0.9969146,0.001050154,0.000792722,0.0007051267,0.00007590117,0.0004614672],"domain_scores_gemma":[0.997013,0.001207673,0.0002528791,0.001062062,0.00039236,0.00007203641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009002706,0.00378018,0.3481714,0.00001035315,0.0007830756,0.000001678563,0.0001201615,0.000001137444,0.6413991,0.0001441288,0.0007147579,0.003973778],"study_design_scores_gemma":[0.002201551,0.01481587,0.8932442,0.00002158482,0.000183291,0.00001641444,0.00004727284,5.054561e-7,0.08781295,0.0003740349,0.001057254,0.0002250444],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956733,0.001091753,0.000009450182,0.00005887865,0.000818862,0.0007816408,0.0008123841,0.00009202873,0.0006617007],"genre_scores_gemma":[0.9990669,0.0003114192,0.000002214074,0.00001765236,0.000205342,0.00004282103,0.00006445806,0.00002556884,0.0002636183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5535862,"threshold_uncertainty_score":0.9992853,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04210102352515022,"score_gpt":0.3871887566650814,"score_spread":0.3450877331399312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}