{"id":"W2904384071","doi":"10.1038/nbt.4306","title":"Minimum Information about an Uncultivated Virus Genome (MIUViG)","year":2018,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":790,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Fisheries and Oceans Canada; University of Guelph","funders":"Lawrence Berkeley National Laboratory; U.S. National Library of Medicine; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; National Institutes of Health; KU Leuven; Laboratory Directed Research and Development; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Battelle; Agence Nationale de la Recherche; Center for Dark Energy Biosphere Investigations; Sight Research UK; Vanderbilt University; Natural Environment Research Council; European Molecular Biology Laboratory; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Cairo University; U.S. Department of Energy; Gordon and Betty Moore Foundation; Simons Foundation; National Science Foundation","keywords":"Genome; Biology; Virus; Virology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00005965721,0.0001185054,0.00009664238,0.00008728119,0.0001533696,0.00003273198,0.0002997303,0.0009095494,0.003353926],"category_scores_gemma":[0.00003878256,0.0001040015,0.00003125011,0.0003176584,0.000337305,0.0005727403,0.0001632284,0.0005396619,0.002936141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001177791,"about_ca_system_score_gemma":0.000006731995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002174122,"about_ca_topic_score_gemma":0.0003400987,"domain_scores_codex":[0.9993058,0.0000158457,0.0001636222,0.0002020715,0.00007332655,0.0002392928],"domain_scores_gemma":[0.9995221,0.000006162069,0.00008418128,0.0003171233,0.00001999862,0.0000504329],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001940006,0.00003329594,0.00003474495,0.000001308252,0.000006116944,0.000001165935,0.0001531516,0.000001058864,0.982341,0.0002267591,0.001839711,0.01534232],"study_design_scores_gemma":[0.0001574138,0.0001745702,0.02613437,0.000003688555,0.000004488194,0.00003280704,0.00003850646,0.00007302535,0.3180356,0.00009421667,0.6551203,0.0001310184],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938616,0.00002759173,0.0002309293,0.001213149,0.0004183532,0.0001466185,0.00004120238,0.0002479074,0.003812707],"genre_scores_gemma":[0.9967006,0.00002172418,0.00147931,0.001352465,0.00008678579,0.000006010587,0.00006986267,0.000008334391,0.000274836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6643054,"threshold_uncertainty_score":0.9978402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003693854334262947,"score_gpt":0.2346836393703461,"score_spread":0.2309897850360832,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}