{"id":"W2904403583","doi":"10.1128/jvi.01679-18","title":"<i>Strawberry Mottle Virus</i> (Family <i>Secoviridae</i> , Order <i>Picornavirales</i> ) Encodes a Novel Glutamic Protease To Process the RNA2 Polyprotein at Two Cleavage Sites","year":2018,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Biology; Proteases; Protease; NS2-3 protease; Cysteine protease; Peptide sequence; Cleavage (geology); Picornavirus; RNA; Biochemistry; Virology; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009799695,0.0003279054,0.0005075019,0.00006036544,0.0006807356,0.00009617775,0.001106612,0.000146732,0.0001769115],"category_scores_gemma":[0.0005103526,0.0001157208,0.0001873254,0.0006866176,0.0006208026,0.0002889191,0.0004177183,0.000573953,0.0002475837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008736731,"about_ca_system_score_gemma":0.00007362109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003005325,"about_ca_topic_score_gemma":0.002193847,"domain_scores_codex":[0.9972149,0.0002510381,0.000667487,0.0004002278,0.0006705102,0.0007958035],"domain_scores_gemma":[0.9981887,0.0004531865,0.0004701781,0.0001498181,0.0004304851,0.000307653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000954825,0.0002483036,0.001404653,0.00001100356,0.00007032052,0.00005153268,0.0002313493,0.00002601387,0.9833072,0.00001376576,0.00951547,0.004165498],"study_design_scores_gemma":[0.002019456,0.007142695,0.05715043,0.0001391196,0.0001192048,0.0008083167,0.0006999579,0.0001855129,0.7377524,0.0009007205,0.1922665,0.0008156977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911601,0.0008288709,0.00005063095,0.006085909,0.0001921486,0.0006107857,0.0003090779,0.00003390354,0.0007285905],"genre_scores_gemma":[0.9916316,0.0002029977,0.0002439102,0.006256897,0.00131096,0.00004860219,0.000009412078,0.000005551306,0.0002900937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2455549,"threshold_uncertainty_score":0.5235736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03064179236568834,"score_gpt":0.2890048896672984,"score_spread":0.25836309730161,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}