{"id":"W2904491092","doi":"10.1371/journal.pone.0208990","title":"Streptococcus agalactiae is not always an obligate intramammary pathogen: Molecular epidemiology of GBS from milk, feces and environment in Colombian dairy herds","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"Universidad de Caldas; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Streptococcus agalactiae; Bulk tank; Herd; Biology; Feces; Obligate anaerobe; Mastitis; Obligate; Dairy cattle; Milking; Multilocus sequence typing; Microbiology; Veterinary medicine; Pathogen; Animal science; Streptococcus; Bacteria; Medicine; Ecology; Genotype; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002057712,0.0001462889,0.0004580492,0.0000871697,0.0000364603,0.000003565094,0.00006698598,0.0001288405,0.0004147101],"category_scores_gemma":[0.00006026846,0.0001333463,0.0000432428,0.00006555671,0.00024806,0.00008039856,0.0000824758,0.000174103,0.00004461803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004412098,"about_ca_system_score_gemma":0.00002807351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001051913,"about_ca_topic_score_gemma":0.0001236365,"domain_scores_codex":[0.9988157,0.0001218288,0.0003547243,0.0003344803,0.0001476814,0.0002256265],"domain_scores_gemma":[0.9992864,0.0001056982,0.0001164276,0.0002879334,0.00003103703,0.0001725546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002161223,0.001175033,0.2845047,0.00009132496,0.0002078228,0.00006813126,0.0003188523,9.123903e-7,0.7098886,0.00007152896,0.00004440471,0.003412529],"study_design_scores_gemma":[0.001121561,0.001393137,0.4994337,0.0002275253,0.0001841726,0.000009051654,0.00006870337,0.0002067542,0.4946507,0.002060236,0.0004943362,0.0001501459],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972888,0.0004822312,0.00006357228,0.00118951,0.00003492338,0.0003912695,0.0001686704,0.00002629952,0.0003547842],"genre_scores_gemma":[0.9958898,0.0005006248,0.002115456,0.001132832,0.0001161077,0.00004812854,0.0000753588,0.00001915292,0.0001025852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2152379,"threshold_uncertainty_score":0.5437703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04960873246438542,"score_gpt":0.2682323005175882,"score_spread":0.2186235680532028,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}