{"id":"W2904491092","doi":"10.1371/journal.pone.0208990","title":"Streptococcus agalactiae is not always an obligate intramammary pathogen: Molecular epidemiology of GBS from milk, feces and environment in Colombian dairy herds","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"Universidad de Caldas; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Streptococcus agalactiae; Bulk tank; Herd; Biology; Feces; Obligate anaerobe; Mastitis; Obligate; Dairy cattle; Milking; Multilocus sequence typing; Microbiology; Veterinary medicine; Pathogen; Animal science; Streptococcus; Bacteria; Medicine; Ecology; Genotype; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002598094,0.0004557725,0.0004069124,0.001442832,0.0004820651,0.0009237842,0.000303479,0.000349094,0.0008361537],"category_scores_gemma":[0.0006935417,0.0002451155,0.0001859314,0.000926214,0.0004156451,0.0002718362,0.0004746443,0.0002290669,0.0001422313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001074127,"about_ca_system_score_gemma":0.000545054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1004383,"about_ca_topic_score_gemma":0.1262557,"domain_scores_codex":[0.9996285,0.00005791665,0.00003221703,0.0001142598,0.00008591421,0.00008119593],"domain_scores_gemma":[0.9995812,0.00004370191,0.0001793532,0.00001855133,0.00007253903,0.0001046626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001532987,0.00003088663,0.9784116,0.0001042316,0.00003987204,0.0002692365,0.0009223128,0.00004748338,0.01472941,0.00002121309,0.0001217471,0.005148692],"study_design_scores_gemma":[0.000001293491,0.00002310995,0.9989308,0.00001416374,0.00001006652,0.0001600772,0.0004686376,0.00004392082,0.0001268215,0.000003273334,0.0002150816,0.000002920084],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980829,0.0009930119,0.00009048454,0.00006022686,0.000003548117,0.00001173704,0.0003106435,0.000005862288,0.0004416411],"genre_scores_gemma":[0.9984782,0.0006582877,0.0003456711,0.0000307761,0.00000447209,0.0000084838,0.0002937403,0.000002646739,0.0001776437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1004383,"threshold_uncertainty_score":0.1997074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04960873246438542,"score_gpt":0.2682323005175882,"score_spread":0.2186235680532028,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}