{"id":"W2904850278","doi":"10.1186/s13059-018-1598-7","title":"Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate","year":2018,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; School of Medicine, New York University; York University","keywords":"Biology; Transposable element; Human genetics; Genetics; Gene; Computational biology; Host (biology); DNA Transposable Elements; Genome Biology; Genome; Functional genomics; Evolutionary biology; Genomics; Computational genomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001162274,0.0003280368,0.0002324804,0.0008639601,0.0002753324,0.0003929967,0.0002234541,0.0004007881,0.00303989],"category_scores_gemma":[0.000228352,0.0001485586,0.0004073119,0.0005565823,0.0001660264,0.0001375254,0.0002977898,0.0003570785,0.0009650155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003647686,"about_ca_system_score_gemma":0.0002384892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001039223,"about_ca_topic_score_gemma":0.002711892,"domain_scores_codex":[0.9998689,0.00000848896,0.000004454572,0.00005223788,0.00004116399,0.00002481797],"domain_scores_gemma":[0.9998217,0.00005991248,0.00005521734,0.00001511857,0.00001980913,0.00002826276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002199791,0.00004969804,0.03277333,0.00011687,0.00004074916,0.0003432931,0.00006834961,0.001200957,0.953278,0.0007157573,0.0004375443,0.01075543],"study_design_scores_gemma":[0.00003439629,0.0003315526,0.4014645,0.00004148469,0.0001657347,0.00249543,0.0004091832,0.04459979,0.5359516,0.001444197,0.01302614,0.00003597625],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9671258,0.0006703924,0.02217952,0.00009353236,0.00001548196,0.00004314394,0.004991326,0.0005530611,0.004327909],"genre_scores_gemma":[0.9627542,0.0002455973,0.02796436,0.0001049075,0.000008429107,0.0000641067,0.006965155,0.0001226564,0.001770574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00303989,"threshold_uncertainty_score":0.01016945,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01878543730555607,"score_gpt":0.2418978370868538,"score_spread":0.2231123997812977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}