{"id":"W2905266164","doi":"10.5598/imafungus.2018.09.02.10","title":"Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans","year":2018,"lang":"en","type":"article","venue":"IMA Fungus","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Genome; Biology; Canker; Synteny; Sequence assembly; Whole genome sequencing; Genetics; Botany; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004718734,0.0004716364,0.0005840005,0.00009583986,0.0003919048,0.00009341401,0.0004458944,0.0003125079,0.0000472258],"category_scores_gemma":[0.0001548756,0.0003815403,0.0001800241,0.0002070896,0.000801713,0.00003040697,0.0003665577,0.000159097,0.000002396562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002628662,"about_ca_system_score_gemma":0.0002209326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001920975,"about_ca_topic_score_gemma":0.0001591577,"domain_scores_codex":[0.9975101,0.00009439394,0.0007200688,0.0007639353,0.00027202,0.0006394571],"domain_scores_gemma":[0.9982327,0.0001079286,0.0004416077,0.0005929515,0.0003611284,0.0002637319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003740547,0.00008449029,0.02527778,0.0002060258,0.0002048666,0.00002078759,0.0003180152,0.00001178344,0.9724463,0.0003768539,0.00019188,0.0004871218],"study_design_scores_gemma":[0.00353697,0.003177711,0.5107567,0.0001871708,0.001241646,0.0007755339,0.0009756668,0.0008752809,0.4424393,0.0009420274,0.03329156,0.001800374],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.973541,0.01966263,0.0009838166,0.0001896182,0.0002227768,0.0007633847,0.004237513,0.00002116028,0.0003780512],"genre_scores_gemma":[0.9946643,0.001506327,0.002196829,0.000211371,0.0005085795,0.00007376538,0.0006301875,0.00005844609,0.0001501879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.530007,"threshold_uncertainty_score":0.9998636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01484053652525941,"score_gpt":0.2627598441395196,"score_spread":0.2479193076142602,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}