{"id":"W2905275624","doi":"10.1093/bioinformatics/bty1003","title":"Pathogen–Host Analysis Tool (PHAT): an integrative platform to analyze next-generation sequencing data","year":2018,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"NOSM University; Lakehead University; Thunder Bay Regional Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Host (biology); Pathogen; Computer science; Computational biology; Data science; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006784451,0.002575846,0.001515689,0.004386949,0.001833874,0.003175062,0.002646027,0.001355845,0.04302726],"category_scores_gemma":[0.01283755,0.002123357,0.002169005,0.003176004,0.0008601058,0.003071043,0.004564045,0.003683647,0.02802988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007789856,"about_ca_system_score_gemma":0.002977227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001634254,"about_ca_topic_score_gemma":0.001726619,"domain_scores_codex":[0.9977719,0.0005364058,0.0002056011,0.0006274371,0.0006433657,0.0002151841],"domain_scores_gemma":[0.9956418,0.002037566,0.0005057399,0.000686865,0.0006461416,0.0004818621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002124304,0.0002820219,0.00800406,0.003633932,0.0009487437,0.001358484,0.001401593,0.004557285,0.06044143,0.009429829,0.7408465,0.1669718],"study_design_scores_gemma":[0.001269744,0.0007018349,0.01495077,0.001131134,0.0006286562,0.003053529,0.0004749441,0.09142929,0.1171204,0.04531286,0.7229362,0.0009906652],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.006620966,0.0007327633,0.4776236,0.0008492311,0.0006029996,0.0008263545,0.08301087,0.4245757,0.005157574],"genre_scores_gemma":[0.02995256,0.0008312163,0.7336065,0.001016737,0.0002466832,0.003118905,0.1411137,0.08440226,0.005711349],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04302726,"threshold_uncertainty_score":0.1439405,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07464074968777398,"score_gpt":0.2967172520582131,"score_spread":0.2220765023704392,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}