{"id":"W2905636110","doi":"10.4315/0362-028x.jfp-18-340","title":"Genomically Informed Strain-Specific Recovery of Shiga Toxin–Producing Escherichia coli during Foodborne Illness Outbreak Investigations","year":2018,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Outbreak; Escherichia coli; Antibiotic resistance; Biology; Microbiology; Strain (injury); Salmonella; Serotype; Food safety; Food microbiology; Biotechnology; Antibiotics; Food science; Bacteria; Virology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000428814,0.0002730346,0.000304948,0.0006327348,0.0003746379,0.0004570366,0.0002432022,0.0005828945,0.0009745697],"category_scores_gemma":[0.001495176,0.0002266223,0.0002782341,0.0005339814,0.0003486716,0.0002353823,0.0005666057,0.0005402348,0.0003813892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002542807,"about_ca_system_score_gemma":0.0003987458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001312403,"about_ca_topic_score_gemma":0.00427868,"domain_scores_codex":[0.9994773,0.0001434528,0.00004161167,0.0001136804,0.0000976952,0.0001262706],"domain_scores_gemma":[0.9995068,0.0001343417,0.00008620757,0.00008799392,0.0001370325,0.00004754591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004324226,0.0001339589,0.01641384,0.00007167146,0.0000207878,0.000412227,0.0003499031,0.0009098237,0.9720872,0.0003447036,0.0001374162,0.008686054],"study_design_scores_gemma":[0.00004636094,0.001475218,0.2285632,0.00005206703,0.0001880107,0.001778099,0.00203875,0.003825243,0.7547175,0.0007018803,0.006564437,0.00004927346],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9819475,0.0001818504,0.01212713,0.0001718307,0.00003277951,0.000262164,0.002166555,0.0001101412,0.003000092],"genre_scores_gemma":[0.9834234,0.0002320852,0.01268602,0.0002302941,0.000009990636,0.00009556394,0.002344666,0.00004561094,0.0009324828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001312403,"threshold_uncertainty_score":0.003260255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0256723193882551,"score_gpt":0.2587356363318989,"score_spread":0.2330633169436439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}