{"id":"W2906218934","doi":"10.1101/505040","title":"<i>De novo</i> genome assembly of the olive fruit fly ( <i>Bactrocera oleae</i> ) developed through a combination of linked-reads and long-read technologies","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect behavior and control techniques","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University and Génome Québec Innovation Centre","funders":"","keywords":"Nanopore sequencing; Minion; Sequence assembly; Bactrocera; Genome; Biology; DNA sequencing; Nanopore; Hybrid genome assembly; Genomics; Computational biology; Genetics; Tephritidae; Gene; PEST analysis; Botany; Transcriptome; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004063639,0.000579589,0.0005235872,0.0006318177,0.0005510752,0.0008212129,0.0005316143,0.0004894062,0.004552089],"category_scores_gemma":[0.0007750549,0.0004293236,0.00111371,0.0005741579,0.0002157152,0.0004894753,0.0006807613,0.001013983,0.003467497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004959079,"about_ca_system_score_gemma":0.0006130495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004361636,"about_ca_topic_score_gemma":0.009077966,"domain_scores_codex":[0.9996302,0.00003773635,0.00003652244,0.0001388521,0.0001103772,0.00004634762],"domain_scores_gemma":[0.9996277,0.00005142688,0.00007806429,0.00007761384,0.0001234349,0.00004173765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001552829,0.00002664988,0.001685856,0.0002813746,0.00006174712,0.0001927288,0.0001130827,0.001006935,0.9707629,0.0005716164,0.003433865,0.02170792],"study_design_scores_gemma":[0.00004209346,0.0002064756,0.02622482,0.00009074697,0.0001273516,0.0007090581,0.0001006261,0.01131716,0.8667846,0.0007610436,0.09355283,0.00008327617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4527897,0.0022036,0.4232129,0.0008017839,0.0005396124,0.001145722,0.07824529,0.01928196,0.02177943],"genre_scores_gemma":[0.3037468,0.001356991,0.5034099,0.000576095,0.00009886617,0.0007383291,0.1725147,0.003736795,0.01382159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004552089,"threshold_uncertainty_score":0.01522827,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01851082562319747,"score_gpt":0.2229399459896001,"score_spread":0.2044291203664027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}