{"id":"W2906218934","doi":"10.1101/505040","title":"<i>De novo</i> genome assembly of the olive fruit fly ( <i>Bactrocera oleae</i> ) developed through a combination of linked-reads and long-read technologies","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect behavior and control techniques","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University and Génome Québec Innovation Centre","funders":"","keywords":"Nanopore sequencing; Minion; Sequence assembly; Bactrocera; Genome; Biology; DNA sequencing; Nanopore; Hybrid genome assembly; Genomics; Computational biology; Genetics; Tephritidae; Gene; PEST analysis; Botany; Transcriptome; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005012719,0.0004331756,0.0006230551,0.00005017226,0.0002073522,0.0001114489,0.001009524,0.0007831514,0.00002116372],"category_scores_gemma":[0.0001649402,0.0002050241,0.0001801005,0.0006215032,0.0004376771,0.0001502953,0.0007606238,0.0005519048,0.000002756252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001184226,"about_ca_system_score_gemma":0.0001602294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002538741,"about_ca_topic_score_gemma":0.00004442895,"domain_scores_codex":[0.9978644,0.0001340455,0.0005834228,0.0006162982,0.000364329,0.0004375543],"domain_scores_gemma":[0.9979094,0.0001039629,0.000727946,0.0004080314,0.000793908,0.00005678158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003199759,0.0001542299,0.01583157,0.0001287853,0.00004955224,0.000003689184,0.00002466202,3.955464e-7,0.9827887,0.0008992288,0.00002590388,0.00006121064],"study_design_scores_gemma":[0.0001816944,0.0001904382,0.4808716,0.0002775278,0.00009181179,8.624765e-8,0.0000117849,0.000008151255,0.5173718,0.00005186315,0.0006124031,0.0003309216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969914,0.0008393473,0.0001039141,0.0003516177,0.0001822987,0.0008401467,0.0002574779,0.0003972197,0.00003656786],"genre_scores_gemma":[0.9979417,0.0007102949,0.0009406784,0.000140258,0.000104079,0.0001452847,0.000001116738,0.00001031303,0.000006261109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.465417,"threshold_uncertainty_score":0.836064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01851082562319747,"score_gpt":0.2229399459896001,"score_spread":0.2044291203664027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}