{"id":"W2906239014","doi":"10.1101/505735","title":"Human Cytomegalovirus Genomes Sequenced Directly from Clinical Material: Variation, Multiple-Strain Infection, Recombination and Mutation","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Medizinischen Hochschule Hannover; University College London; Wellcome Trust","keywords":"Pseudogene; Biology; Genetics; Human cytomegalovirus; Genome; Cytomegalovirus; Recombination; Strain (injury); Gene; Population; Mutation; Virology; Virus; Herpesviridae; Viral disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001584565,0.0003223449,0.0005308987,0.002109686,0.0004784462,0.001033783,0.0002781081,0.0005790565,0.001451325],"category_scores_gemma":[0.003232021,0.0001719182,0.0005876962,0.00214482,0.0003776424,0.0002987885,0.0006032599,0.000532617,0.0007274249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003695997,"about_ca_system_score_gemma":0.000682259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009861473,"about_ca_topic_score_gemma":0.002005421,"domain_scores_codex":[0.9986463,0.0002767176,0.0001498594,0.0003421415,0.0004268611,0.0001580078],"domain_scores_gemma":[0.9979244,0.0008374384,0.0003864467,0.0003567422,0.0003578344,0.0001370672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003642712,0.0003147027,0.4315164,0.002906794,0.0009701893,0.002031022,0.001409322,0.003315345,0.4571713,0.001253932,0.007709856,0.08775844],"study_design_scores_gemma":[0.0001456054,0.0006070479,0.7999333,0.0004229386,0.000607626,0.00553516,0.001009336,0.005601464,0.1432667,0.001515854,0.04128713,0.00006793744],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9411148,0.003191911,0.004717411,0.0002456594,0.00004376318,0.0001034823,0.04833536,0.0001759671,0.002071546],"genre_scores_gemma":[0.8523747,0.001458555,0.01474204,0.0002544167,0.00004576215,0.0001202705,0.1297741,0.0001612183,0.001069004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002109686,"threshold_uncertainty_score":0.008380055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03962179363953709,"score_gpt":0.3176317635439771,"score_spread":0.27800996990444,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}