{"id":"W2907294158","doi":"10.1101/507384","title":"A complex copy number variant underlies differences in both colour plumage and cold adaptation in a dimorphic seabird","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"McGill University; Nature; Environment and Climate Change Canada; Natural Sciences and Engineering Research Council of Canada; Queen's University; American Ornithologists' Union","keywords":"Biology; Genetics; Evolutionary biology; Adaptation (eye); Plumage; Gene; Candidate gene; Sexual dimorphism; Genetic architecture; Copy-number variation; Genome; Quantitative trait locus; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002770482,0.000355339,0.0003987963,0.0001377648,0.00009468265,0.0001323698,0.0002822667,0.0005818668,0.0000655278],"category_scores_gemma":[0.00007338702,0.0003945633,0.00005634597,0.0002141961,0.0001980987,0.00001001,0.000422292,0.0003085136,0.00001152277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000063409,"about_ca_system_score_gemma":0.0002871084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002651326,"about_ca_topic_score_gemma":0.0003104472,"domain_scores_codex":[0.9981641,0.0001839779,0.0003574983,0.0007540641,0.0002088638,0.0003314999],"domain_scores_gemma":[0.9990157,0.00002139273,0.0002310021,0.0004581221,0.0001502766,0.000123493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001712904,0.0001379552,0.6432533,0.0003019681,0.0001206704,0.00005817935,0.000122796,0.0001804647,0.3543581,0.0007175705,0.0005744123,0.000003261459],"study_design_scores_gemma":[0.001000442,0.00008635872,0.9868293,0.000154625,0.0000386148,8.803666e-8,0.00003804619,0.0006385759,0.008414007,0.00002070921,0.002241158,0.0005381148],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997665,0.0002535623,0.0009314753,0.0001164401,0.0002972886,0.0004910725,0.0001945114,0.00002971589,0.00002089095],"genre_scores_gemma":[0.9949208,0.0002657797,0.004384682,0.0001806795,0.0001480384,0.00004555999,0.000004322381,0.00003574548,0.00001431631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3459441,"threshold_uncertainty_score":0.9998506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02784544001140653,"score_gpt":0.2298888014407099,"score_spread":0.2020433614293033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}