{"id":"W2908690176","doi":"10.3390/mps3020028","title":"Mapping Quantitative Trait Loci onto Chromosome-Scale Pseudomolecules in Flax","year":2020,"lang":"en","type":"article","venue":"Methods and Protocols","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Quantitative trait locus; Family-based QTL mapping; Biology; Genetics; Candidate gene; Single-nucleotide polymorphism; Chromosome; Inclusive composite interval mapping; Microsatellite; Genome Scan; Genome; Genetic marker; Gene mapping; Gene; Allele; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003249882,0.0001112058,0.000211558,0.000007303402,0.00007114669,0.00005100152,0.0001173086,0.00006036276,0.000123281],"category_scores_gemma":[0.00006081813,0.0000468603,0.00004913155,0.0002516274,0.00004267182,0.00005137315,0.00003786606,0.00008567683,0.000005218702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000710757,"about_ca_system_score_gemma":0.000009122406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004153434,"about_ca_topic_score_gemma":0.0002147816,"domain_scores_codex":[0.9989854,0.000274796,0.0001840202,0.0002613938,0.00009846115,0.0001959291],"domain_scores_gemma":[0.9996036,0.0001672563,0.00005016584,0.00002797809,0.00001896709,0.0001320542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000133047,0.00005178574,0.003457482,0.00009351878,0.00001032312,0.00001750356,0.0009042459,0.000003987581,0.7926102,0.0003265229,0.0003313044,0.2020601],"study_design_scores_gemma":[0.001436457,0.001731472,0.3281431,0.0004581507,0.00001922304,0.00001113768,0.004223912,0.002544819,0.07387887,0.01254003,0.5739691,0.001043742],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9426588,0.001034699,0.005116827,0.005524138,0.00002509287,0.04125596,0.0002851652,0.0001046679,0.003994687],"genre_scores_gemma":[0.2208252,0.0003447675,0.6766412,0.007817658,0.000872713,0.09272128,0.0002139167,0.00001205285,0.0005512982],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7218336,"threshold_uncertainty_score":0.1910908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08443694286608752,"score_gpt":0.3663422542709562,"score_spread":0.2819053114048687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}