{"id":"W2908787160","doi":"10.1016/j.meegid.2019.01.017","title":"Nontuberculous mycobacteria: Insights on taxonomy and evolution","year":2019,"lang":"en","type":"review","venue":"Infection Genetics and Evolution","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Nontuberculous mycobacteria; Taxonomy (biology); Biology; Evolutionary biology; Whole genome sequencing; Computational biology; Genome; Mycobacterium; Genetics; Gene; Ecology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009250701,0.0008240973,0.001464012,0.002628327,0.0002644924,0.001437428,0.0009507902,0.001454921,0.002625063],"category_scores_gemma":[0.001650921,0.0002461031,0.0003997314,0.002755824,0.0009196159,0.001587338,0.0009089395,0.001856758,0.001228121],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009244138,"about_ca_system_score_gemma":0.001739386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001429492,"about_ca_topic_score_gemma":0.002394578,"domain_scores_codex":[0.9997193,0.00005258667,0.00003553991,0.00005763252,0.0001004079,0.00003445717],"domain_scores_gemma":[0.9989654,0.0005940373,0.0001295979,0.00003140306,0.0001916963,0.00008787683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007409621,0.00002872015,0.0003519195,0.0123577,0.00007542659,0.0001699022,0.00006617876,0.0003352985,0.00146888,0.004488142,0.02328636,0.9572974],"study_design_scores_gemma":[0.00001112108,0.00004993075,0.001139404,0.003860111,0.0001055875,0.001050826,0.0000890567,0.00009115054,0.0002397586,0.003405448,0.9899396,0.00001784128],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004978138,0.9991666,0.00007042011,0.0002573805,0.0001328795,7.932018e-7,0.000008739999,0.000003109698,0.0003103009],"genre_scores_gemma":[0.000492937,0.9987128,0.0001225638,0.0001984204,0.0002450037,0.000001420704,0.00001931104,8.447453e-7,0.0002066665],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002628327,"threshold_uncertainty_score":0.008781672,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06074769376519873,"score_gpt":0.3180266241981481,"score_spread":0.2572789304329494,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}