{"id":"W2909538683","doi":"10.1186/s12862-018-1316-9","title":"Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation","year":2019,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; National Research Foundation of Korea; Ministry of Oceans and Fisheries; Grantová Agentura České Republiky; National Research Foundation","keywords":"Biology; Plastid; Lineage (genetic); Genome; Evolutionary biology; Gene; Comparative genomics; Horizontal gene transfer; Genome evolution; Genomics; Phylogenomics; Molecular clock; Genetics; Phylogenetics; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007559112,0.0001101064,0.0001896312,0.00004156298,0.00005312594,0.000002739015,0.000114364,0.0001762286,0.00002146341],"category_scores_gemma":[0.00002859011,0.0001109429,0.00004967099,0.00004908122,0.000158988,0.000004202609,0.0001547862,0.00005765272,0.00001629544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003867047,"about_ca_system_score_gemma":0.00009124843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005706253,"about_ca_topic_score_gemma":0.00003046678,"domain_scores_codex":[0.9992518,0.0001081351,0.0001749439,0.0002871514,0.00004172106,0.0001362782],"domain_scores_gemma":[0.99951,0.0000307352,0.000119282,0.0001904732,0.0001072635,0.000042191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003567174,0.00005188278,0.3215477,0.00002255169,0.00008335672,4.214908e-7,0.00004838064,0.0001788049,0.6745002,0.002994293,0.0001748332,0.00004092851],"study_design_scores_gemma":[0.001197088,0.0008844485,0.9588545,0.000008115173,0.00003466304,0.00004347827,0.0001176619,0.01018022,0.02732077,0.0005472769,0.0005779975,0.0002337737],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892297,0.000733786,0.008861658,0.00002604385,0.0002024876,0.0002585581,0.0003080091,0.000006880417,0.0003729175],"genre_scores_gemma":[0.99577,0.000091501,0.002803969,0.00006342727,0.00004989756,0.000005587004,0.0009487684,0.00000549917,0.0002613325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6471794,"threshold_uncertainty_score":0.4524122,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0223235495027698,"score_gpt":0.2246949605951215,"score_spread":0.2023714110923517,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}