{"id":"W2910186643","doi":"10.1016/j.jbiotec.2018.12.016","title":"Genome mining reveals the origin of a bald phenotype and a cryptic nucleocidin gene cluster in Streptomyces asterosporus DSM 41452","year":2019,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Biology; Complementation; Gene cluster; Genetics; Gene; Transposable element; Genome; Whole genome sequencing; Streptomyces; Phenotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003496337,0.0001267974,0.0003098328,0.0001172861,0.00002759461,0.000009216077,0.0002610192,0.0002327078,0.00001094942],"category_scores_gemma":[0.00005881435,0.00009010212,0.00006996243,0.0001106659,0.0001474236,0.000001671116,0.0001906224,0.0001597511,0.000002089715],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001458894,"about_ca_system_score_gemma":0.0000451473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009782605,"about_ca_topic_score_gemma":0.00002119659,"domain_scores_codex":[0.9990776,0.00004437704,0.0004264758,0.0001745916,0.00008379076,0.0001931907],"domain_scores_gemma":[0.9992577,0.00003134955,0.0003707972,0.000247225,0.00006453731,0.0000283214],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009942494,0.00002709381,0.03621894,0.00001886259,0.00009889675,0.00000430687,0.0002063377,0.00005390931,0.9622319,0.00006901985,0.00003215467,0.0009391865],"study_design_scores_gemma":[0.003367555,0.003129633,0.4600086,0.0001062495,0.0001101284,0.0003633566,0.002222569,0.00006974024,0.517561,0.001243691,0.01138781,0.000429772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921904,0.006566217,0.00003322716,0.0008625188,0.0001440031,0.0001350834,0.000006067341,0.000001295366,0.00006115377],"genre_scores_gemma":[0.9963307,0.001638785,0.001753623,0.0001318411,0.00007750472,0.000001741824,0.000001001501,0.00001264355,0.00005214387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4446709,"threshold_uncertainty_score":0.3674258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008350487546708609,"score_gpt":0.2243639481294312,"score_spread":0.2160134605827226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}