{"id":"W2910186643","doi":"10.1016/j.jbiotec.2018.12.016","title":"Genome mining reveals the origin of a bald phenotype and a cryptic nucleocidin gene cluster in Streptomyces asterosporus DSM 41452","year":2019,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Biology; Complementation; Gene cluster; Genetics; Gene; Transposable element; Genome; Whole genome sequencing; Streptomyces; Phenotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001006897,0.0003152736,0.0004352126,0.0007739179,0.0002184961,0.0004663474,0.0002328049,0.0003373959,0.0006512118],"category_scores_gemma":[0.0002654499,0.0001457327,0.0003650761,0.0007833731,0.0001817703,0.0001384174,0.000324706,0.0004353373,0.0004790156],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002487423,"about_ca_system_score_gemma":0.0003227942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00256785,"about_ca_topic_score_gemma":0.001828654,"domain_scores_codex":[0.9998423,0.00001436694,0.00001662952,0.00004531638,0.00005272336,0.00002868354],"domain_scores_gemma":[0.9997694,0.00005363866,0.00006344674,0.00003123832,0.00002821006,0.00005405863],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002386303,0.00004163931,0.003366437,0.00003673882,0.00001103929,0.0004172146,0.00005492612,0.0001163998,0.993107,0.00004831162,0.00004506257,0.002516675],"study_design_scores_gemma":[0.00004111776,0.0005099869,0.4280505,0.00002757506,0.0001477618,0.003431796,0.0008607051,0.002842306,0.5583155,0.0002358,0.005497641,0.00003930772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960456,0.0001667022,0.001140753,0.00006508049,0.00001040558,0.00001894164,0.001811005,0.00005058256,0.0006908745],"genre_scores_gemma":[0.9908451,0.0001110694,0.001807003,0.00004644245,0.000005097683,0.00001327129,0.006021318,0.00002522327,0.001125564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00256785,"threshold_uncertainty_score":0.005105734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008350487546708609,"score_gpt":0.2243639481294312,"score_spread":0.2160134605827226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}