{"id":"W2911706541","doi":"10.1128/mra.01537-18","title":"Whole-Genome Sequencing of Legionella jordanis Strains NML 060502 and NML 130005, Recovered from a Lower Respiratory Tract Infection and Water, Respectively","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada; Université de Saint-Boniface","funders":"Public Health Agency of Canada","keywords":"Legionella; Biology; Microbiology; Genome; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004171348,0.0006371047,0.0006217794,0.001273869,0.0004655289,0.0007633334,0.000383646,0.0004846647,0.001855471],"category_scores_gemma":[0.001132457,0.0002402948,0.000973126,0.002327996,0.000222233,0.0003326588,0.0005478201,0.0006437752,0.001227896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005433508,"about_ca_system_score_gemma":0.001476974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006140504,"about_ca_topic_score_gemma":0.01317806,"domain_scores_codex":[0.9996468,0.00003893911,0.00004424995,0.0001219228,0.0001056908,0.00004240184],"domain_scores_gemma":[0.9994479,0.00009583632,0.0001455825,0.00005557276,0.0001611667,0.00009387609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00124613,0.0002046511,0.02580956,0.001351427,0.0001903209,0.0006360533,0.001216917,0.001181602,0.9296705,0.0004020623,0.003495247,0.03459564],"study_design_scores_gemma":[0.000190594,0.001300286,0.7175806,0.0005800731,0.0007152933,0.001818271,0.002851046,0.006155694,0.1443615,0.0005972061,0.1237199,0.0001295147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.852705,0.00165548,0.008541206,0.0002387104,0.00007134052,0.0002066948,0.1322043,0.0004021883,0.003975101],"genre_scores_gemma":[0.4741535,0.001389932,0.04594155,0.0003148811,0.00003964149,0.0004062886,0.4696532,0.0003022767,0.00779879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006140504,"threshold_uncertainty_score":0.01220953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01737345900820175,"score_gpt":0.2444093108460456,"score_spread":0.2270358518378439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}