{"id":"W2911914717","doi":"10.1016/j.cub.2018.12.044","title":"A Single Interacting Species Leads to Widespread Parallel Evolution of the Stickleback Genome","year":2019,"lang":"en","type":"article","venue":"Current Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Science Foundation; Janggen-Pöhn-Stiftung; University of British Columbia; Canada Research Chairs; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Stickleback; Gasterosteus; Biology; Natural selection; Evolutionary biology; Abiotic component; Parallel evolution; Selection (genetic algorithm); Ecological selection; Adaptation (eye); Ecology; Population; Biotic component; Local adaptation; Genome; Three-spined stickleback; Gene; Genetics; Phylogenetics; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005474706,0.00008540711,0.0001053118,0.00002944809,0.000037123,0.000006030144,0.0002115371,0.00008125597,0.0000941692],"category_scores_gemma":[0.0001033838,0.00006506738,0.00007079855,0.00007572114,0.00005642031,0.000002029036,0.0002128497,0.00006642254,0.00004491886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001929368,"about_ca_system_score_gemma":0.00002664407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007738047,"about_ca_topic_score_gemma":0.00001638376,"domain_scores_codex":[0.9994183,0.00005818772,0.0001386148,0.0001977325,0.00004892212,0.0001382378],"domain_scores_gemma":[0.9995478,0.00001618023,0.00009361562,0.0002450569,0.00006600651,0.00003136121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003997231,0.00002099808,0.1559798,0.00001403311,0.00001253985,2.694229e-8,0.00008508201,0.000531106,0.8413411,0.0005717446,0.0004067132,0.0009969136],"study_design_scores_gemma":[0.0006869046,0.0005678616,0.4446808,0.00006262815,0.00003552942,0.000009234782,0.0002982984,0.00003793594,0.09383459,0.0004353792,0.4590329,0.0003178642],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951596,0.0004976235,0.001817544,0.0001174148,0.001503272,0.0001733198,0.00003436681,0.000004031208,0.0006928014],"genre_scores_gemma":[0.9988818,0.00001328617,0.0002786453,0.00005161638,0.0001195338,0.00000182293,0.00006271972,0.000004418431,0.0005862077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7475065,"threshold_uncertainty_score":0.265337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02421619871501424,"score_gpt":0.2636672633672489,"score_spread":0.2394510646522346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}