{"id":"W2912372278","doi":"10.1007/s11274-019-2614-0","title":"Evaluation of different molecular and phenotypic methods for identification of environmental Burkholderia cepacia complex","year":2019,"lang":"en","type":"article","venue":"World Journal of Microbiology and Biotechnology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; Public Health Agency of Canada","keywords":"Biology; Burkholderia cepacia complex; Burkholderia; Microbiology; 16S ribosomal RNA; Burkholderia cenocepacia; 23S ribosomal RNA; Ribosomal RNA; Multilocus sequence typing; Bacteria; Gene; Genetics; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001099281,0.00007912499,0.000381498,0.000304004,0.00001779391,0.000001800026,0.00007127873,0.000128527,0.00007083937],"category_scores_gemma":[0.0001864736,0.00005955183,0.00005408088,0.00007178877,0.0004237934,0.0000228433,0.00004824773,0.0001454358,4.708356e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003723225,"about_ca_system_score_gemma":0.00002925567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":6.806619e-7,"about_ca_topic_score_gemma":0.000002472571,"domain_scores_codex":[0.9990938,0.0001705436,0.0004244686,0.0001286574,0.00007137765,0.000111107],"domain_scores_gemma":[0.999193,0.0001396968,0.0004053981,0.000124252,0.0001108489,0.00002680898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003167709,0.00008268659,0.0013737,0.00007766759,0.0001350575,3.732973e-7,0.00002561828,0.000002341042,0.9428166,0.0004129061,0.00001367226,0.05474259],"study_design_scores_gemma":[0.002037202,0.0009066537,0.02440582,0.00005385643,0.0002354098,0.000194962,0.0001014012,0.0003076769,0.9686361,0.002256805,0.000816531,0.00004761413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9876712,0.005302175,0.005733447,0.0007925864,0.00007399401,0.000391659,0.00002495121,0.00000277205,0.000007222932],"genre_scores_gemma":[0.9839816,0.0002524775,0.01569601,0.00001781664,0.00000873095,0.000002951086,0.00001382245,0.000005224992,0.00002136573],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05469498,"threshold_uncertainty_score":0.2428453,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02318607373499683,"score_gpt":0.3446131627975799,"score_spread":0.3214270890625831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}