{"id":"W2912428117","doi":"10.1371/journal.pone.0211159","title":"Genetic and genomic analyses of testicular hypoplasia in Nellore cattle","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Single-nucleotide polymorphism; Heritability; Genome-wide association study; SNP; Beef cattle; Genetics; Animal breeding; Trait; Candidate gene; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005841923,0.0001895006,0.0002659183,0.001207081,0.0003819701,0.0003101456,0.0002124998,0.0002442083,0.0007984861],"category_scores_gemma":[0.000715044,0.0001335096,0.0004454366,0.00115638,0.0002214367,0.0001011259,0.0002165352,0.0002424479,0.00008079479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002906465,"about_ca_system_score_gemma":0.0002499819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00680023,"about_ca_topic_score_gemma":0.01539813,"domain_scores_codex":[0.999557,0.0001242746,0.00002841871,0.0001542872,0.00008108356,0.00005510583],"domain_scores_gemma":[0.9994385,0.0001894057,0.0002154535,0.00003200453,0.0000520689,0.00007259068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008936147,0.0002108054,0.8175096,0.00009765979,0.0005385753,0.0009956463,0.0006853479,0.001040933,0.1629147,0.0001861947,0.0001148234,0.01481222],"study_design_scores_gemma":[0.000004062009,0.0000513744,0.9986914,0.000002896709,0.00005142131,0.0001746957,0.00004644691,0.0004051467,0.0004167033,0.00001507485,0.0001383613,0.000002466126],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992141,0.00009172389,0.0002884788,0.000007382536,8.947649e-7,0.000002841789,0.0002460511,0.000002453678,0.0001461339],"genre_scores_gemma":[0.9977047,0.00008346896,0.001231852,0.00001768866,0.00000430743,0.000008695906,0.0006919408,0.000003824052,0.0002536024],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00680023,"threshold_uncertainty_score":0.01352131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02876150034163149,"score_gpt":0.2362603445430566,"score_spread":0.2074988442014251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}