{"id":"W2912623612","doi":"10.1038/s41379-018-0198-0","title":"Colitis-associated colorectal adenocarcinomas are frequently associated with non-intestinal mucin profiles and loss of SATB2 expression","year":2019,"lang":"en","type":"article","venue":"Modern Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; Sinai Health System","funders":"","keywords":"Colitis; Medicine; Immunohistochemistry; Colorectal cancer; Adenocarcinoma; Pathology; Carcinoma; CDX2; Mucin; Inflammatory bowel disease; Collagenous colitis; Gastroenterology; Internal medicine; Disease; Cancer; Biology; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001628535,0.0002730505,0.0002311026,0.001307056,0.0002923529,0.000431,0.0001577553,0.0002668547,0.002092437],"category_scores_gemma":[0.0008192128,0.0001374943,0.0002916903,0.001409997,0.0002800737,0.0001744262,0.0003328834,0.0003085251,0.0003756837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001259761,"about_ca_system_score_gemma":0.0001447105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000739486,"about_ca_topic_score_gemma":0.001291944,"domain_scores_codex":[0.9997619,0.00004186509,0.00003080139,0.0000461155,0.00006748088,0.00005197316],"domain_scores_gemma":[0.9990956,0.0001305,0.000498552,0.00006118343,0.00008274802,0.0001314112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001293832,0.00006033475,0.7975172,0.0002424001,0.0002131848,0.01245972,0.0001361366,0.0001042679,0.1689401,0.0002920208,0.0004690743,0.0182716],"study_design_scores_gemma":[0.000008172035,0.00007979551,0.9659238,0.00001985817,0.0001294566,0.02215993,0.0001688229,0.0002265804,0.008644602,0.0001486169,0.002482429,0.000007834797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939161,0.002700652,0.0007347371,0.00008547646,0.00002353065,0.00001003943,0.0004533162,0.00003838214,0.002037799],"genre_scores_gemma":[0.9976934,0.000715972,0.0005541342,0.00002629312,0.00001854128,0.000004470557,0.0004800454,0.000009033384,0.0004981302],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002092437,"threshold_uncertainty_score":0.006999969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01207554261273242,"score_gpt":0.2345509857938619,"score_spread":0.2224754431811295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}