{"id":"W2912851663","doi":"10.1038/s41598-019-38733-1","title":"Plasmid DNA contaminant in molecular reagents","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Austrian Science Fund","keywords":"Metagenomics; Plasmid; Computational biology; Biology; Polymerase chain reaction; Reverse transcriptase; DNA; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00720915,0.001581881,0.001347116,0.002837261,0.001317311,0.00231992,0.001380245,0.001986061,0.01070979],"category_scores_gemma":[0.01890959,0.001083816,0.00110092,0.002723481,0.001531925,0.001251209,0.001561836,0.00179195,0.01014805],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00063188,"about_ca_system_score_gemma":0.001686496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009368588,"about_ca_topic_score_gemma":0.001202877,"domain_scores_codex":[0.9853842,0.004161942,0.001685199,0.003592708,0.004426391,0.0007496009],"domain_scores_gemma":[0.983609,0.006702051,0.002557597,0.004218083,0.002576455,0.0003368473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007383541,0.0002168094,0.009970172,0.002867857,0.0001564289,0.001427703,0.0006974207,0.0005313979,0.9117383,0.002800531,0.004155819,0.06469929],"study_design_scores_gemma":[0.00004192305,0.0006467484,0.007166814,0.0008367524,0.0004407374,0.002151499,0.0002865532,0.001435297,0.8577085,0.002325544,0.1268953,0.00006439284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1945977,0.02075971,0.7397146,0.003007998,0.002459188,0.003714364,0.01182046,0.006659161,0.01726679],"genre_scores_gemma":[0.3229773,0.01196024,0.5907912,0.003291117,0.0005325793,0.005934808,0.03679096,0.002876377,0.02484543],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01070979,"threshold_uncertainty_score":0.03812611,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005937201810360739,"score_gpt":0.2164861079460578,"score_spread":0.210548906135697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}