{"id":"W2912971860","doi":"10.1101/533398","title":"Allele-specific transcript abundance: A pilot study in healthy centenarians","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; BC Cancer Agency","funders":"Lotte and John Hecht Memorial Foundation","keywords":"Biology; Allele; Longevity; Gene; Genetics; Transcriptome; Haplotype; Genetic association; Disease; Ploidy; Immune system; Gene expression; Coding region; Single-nucleotide polymorphism; Genotype; Internal medicine; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002578166,0.0004542018,0.0004032798,0.0009562602,0.0005944482,0.000480887,0.0001618526,0.0003535149,0.002029394],"category_scores_gemma":[0.0004536603,0.0001811414,0.0002540878,0.0004592567,0.0005153244,0.0001318015,0.0004039233,0.0002607561,0.0003144104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001556608,"about_ca_system_score_gemma":0.00009944607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001793163,"about_ca_topic_score_gemma":0.001659855,"domain_scores_codex":[0.9998603,0.00001705954,0.00001200376,0.00006314066,0.00001852526,0.00002893123],"domain_scores_gemma":[0.9997119,0.00006068973,0.00005217387,0.00006713808,0.00005536497,0.00005257992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006043871,0.0003038501,0.1873941,0.0001906527,0.0001526192,0.002070125,0.002251827,0.0001580307,0.7868898,0.0001630419,0.0002151939,0.01416695],"study_design_scores_gemma":[0.0000634312,0.001523638,0.9560388,0.00001223829,0.0001682006,0.002732656,0.0009836131,0.0002599657,0.0362325,0.0001314875,0.001824653,0.00002863284],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990568,0.0001593797,0.0002650466,0.000008118234,0.000004628203,0.000009815253,0.0002627757,0.000007252798,0.000226193],"genre_scores_gemma":[0.9978562,0.0001341344,0.0004294786,0.0000252872,0.00001001955,0.000025477,0.0004334692,0.00001239695,0.001073584],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002029394,"threshold_uncertainty_score":0.006788969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02647946403107831,"score_gpt":0.2491433403912593,"score_spread":0.222663876360181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}