{"id":"W2913112151","doi":"10.1038/s41598-018-37815-w","title":"Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Toronto; Tennessee Soybean Promotion Board; United Soybean Board; University of South Dakota; U.S. Department of Defense","keywords":"Biology; Genetics; Gene; Soybean cyst nematode; Synteny; Serine hydroxymethyltransferase; Haplotype; Genome; In silico; Gene family; Allele; Amino acid","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007752731,0.0001612463,0.0001433878,0.0003259848,0.0001290256,0.0001010815,0.0001095622,0.0001256291,0.0005474049],"category_scores_gemma":[0.00009761035,0.00009835868,0.0002474364,0.0002474996,0.00009531279,0.00006977249,0.0001475049,0.0002186271,0.0001806875],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001441746,"about_ca_system_score_gemma":0.0001456254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006347821,"about_ca_topic_score_gemma":0.001083126,"domain_scores_codex":[0.9999477,0.000005261998,0.000004461467,0.00002190982,0.00001239728,0.000008308491],"domain_scores_gemma":[0.9999456,0.000007037276,0.00001820699,0.000006865636,0.000007611447,0.00001461173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001087803,0.000006592988,0.004893234,0.0000250736,0.000009651386,0.0001129129,0.00003645397,0.00005528048,0.9930041,0.00003701685,0.00001659514,0.001694151],"study_design_scores_gemma":[0.00003049632,0.0003365174,0.8384039,0.00002761426,0.0001267101,0.002447915,0.0001735171,0.002273644,0.150189,0.0002322199,0.005742962,0.00001548467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984566,0.0002020871,0.0005610381,0.00001655682,0.000001877,0.000005136817,0.0003985001,0.00001941005,0.0003387724],"genre_scores_gemma":[0.9954857,0.0001503849,0.001285811,0.00002429714,0.000002914587,0.00001570851,0.002292986,0.00001123641,0.0007309155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006347821,"threshold_uncertainty_score":0.001831293,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02524623179264329,"score_gpt":0.2203992685321779,"score_spread":0.1951530367395346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}