{"id":"W2913641200","doi":"10.1128/cmr.00060-18","title":"<i>Escherichia coli</i> Pathobionts Associated with Inflammatory Bowel Disease","year":2019,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":370,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Torben og Alice Frimodts Fond; Hvidovre Hospital; Lundbeckfonden; CH.I.L.D. Foundation; Herlev Hospital","keywords":"Escherichia coli; Inflammatory bowel disease; Enterobacteriaceae; Microbiology; Inflammatory Bowel Diseases; Medicine; Gastroenterology; Biology; Immunology; Disease; Internal medicine; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002618295,0.001071541,0.004073659,0.00007648771,0.0001537865,0.0000385862,0.001148482,0.001426057,0.00004862148],"category_scores_gemma":[0.003872124,0.0007089284,0.001845285,0.0002931913,0.0009195129,0.000006252223,0.0009223761,0.001358043,0.0008463377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001101562,"about_ca_system_score_gemma":0.001675228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":8.246868e-7,"about_ca_topic_score_gemma":0.00002910649,"domain_scores_codex":[0.9911571,0.003876603,0.002277238,0.001709434,0.00006267504,0.0009170029],"domain_scores_gemma":[0.9955463,0.0004862112,0.001563423,0.001711833,0.0002414362,0.000450773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006554237,0.00191888,0.01016597,0.06285314,0.007559735,0.000100759,0.00002321219,0.000001678089,0.003227679,0.00005041172,0.3449143,0.5685288],"study_design_scores_gemma":[0.0005881024,0.0006703322,0.0001826935,0.008698717,0.001215739,0.0000109134,0.000001569481,5.620656e-7,9.699438e-7,0.00000214982,0.9877967,0.0008315602],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008169463,0.9939135,0.00001505463,0.00003481375,0.0006324893,0.003784828,0.0004248198,0.00004028773,0.0003372217],"genre_scores_gemma":[0.000008488101,0.9898292,0.0001486956,0.001121342,0.0005695505,0.0007448716,0.002752692,0.0001509695,0.004674153],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6428824,"threshold_uncertainty_score":0.9999316,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08038360261537292,"score_gpt":0.3868404584867771,"score_spread":0.3064568558714041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}