{"id":"W2914184348","doi":"10.1093/bioinformatics/btz080","title":"ChimeraUGEM: unsupervised gene expression modeling in any given organism","year":2019,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Azrieli Foundation; Tel Aviv University; Ministry of Science, Technology and Space","keywords":"Organism; Chlamydomonas reinhardtii; Model organism; Gene; Computational biology; Source code; Computer science; Biology; Gene expression; Coding (social sciences); Software; Coding region; Genetics; Programming language","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006983135,0.0008396971,0.0006545219,0.0004948187,0.0004607243,0.000799432,0.001724436,0.001014707,0.002871898],"category_scores_gemma":[0.00192886,0.0004596029,0.001332262,0.000639929,0.0005753713,0.0005342176,0.00084054,0.001200569,0.0010967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007381651,"about_ca_system_score_gemma":0.001445884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007858149,"about_ca_topic_score_gemma":0.008621186,"domain_scores_codex":[0.9997873,0.00005836975,0.000008974909,0.00009493548,0.00003631103,0.00001418254],"domain_scores_gemma":[0.9994623,0.000364043,0.00004121854,0.00005512216,0.00004824407,0.00002909358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001416551,0.00004739578,0.002655477,0.0002012536,0.0001305026,0.0001106169,0.000118606,0.942168,0.01119984,0.006125132,0.006197087,0.03090443],"study_design_scores_gemma":[0.000007704226,0.00001163653,0.0002385097,0.000004617933,0.000008059773,0.00002866745,0.000007501523,0.9924216,0.001946627,0.003049973,0.002267952,0.000007233703],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02656939,0.0001746427,0.9544229,0.000252553,0.0000389306,0.00004971722,0.003926868,0.01308885,0.001476207],"genre_scores_gemma":[0.2649289,0.0004416776,0.7176815,0.0002738589,0.00005627401,0.000634208,0.0101174,0.002683793,0.003182321],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007858149,"threshold_uncertainty_score":0.01562482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01067659054947601,"score_gpt":0.2116643274055728,"score_spread":0.2009877368560968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}