{"id":"W2914207706","doi":"10.1186/s12866-018-1357-7","title":"Novel virulence, antibiotic resistance and toxin gene-specific PCR-based assays for rapid pathogenicity assessment of Arcobacter faecis and Arcobacter lanthieri","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; McMaster University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Virulence; Multiplex polymerase chain reaction; Arcobacter; Microbiology; Parasitology; Antibiotic resistance; Toxin; Cytolethal distending toxin; Gene; Pathogenicity island; Multiplex; Polymerase chain reaction; Antibiotics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001868797,0.001129613,0.0006102787,0.001231491,0.0002026694,0.0006506915,0.0008361178,0.0008595798,0.0007973702],"category_scores_gemma":[0.002272827,0.0004869423,0.0005296937,0.000483068,0.0004621243,0.0007006213,0.0006321441,0.0008292533,0.0006403709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003697396,"about_ca_system_score_gemma":0.0004541672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004084847,"about_ca_topic_score_gemma":0.0009518539,"domain_scores_codex":[0.9965958,0.0008270357,0.0002960008,0.0008903983,0.001208088,0.0001826462],"domain_scores_gemma":[0.9979906,0.0005129761,0.0007016201,0.0001477975,0.0005149072,0.0001321338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001849867,0.0002221852,0.007668782,0.0002032006,0.00002472086,0.00006039927,0.000111794,0.0003647673,0.9727701,0.00007888015,0.00009061005,0.01821957],"study_design_scores_gemma":[0.00004352144,0.002093793,0.02808449,0.00007639395,0.0001613976,0.001734669,0.0002618244,0.01154423,0.9525652,0.00015263,0.003204674,0.00007725548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8363634,0.003276749,0.1554936,0.0002768109,0.0001220928,0.0007198899,0.001182458,0.0008172815,0.001747687],"genre_scores_gemma":[0.6891637,0.001311715,0.303708,0.0002055043,0.00005913546,0.0008929959,0.001884057,0.00004966331,0.002725184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001868797,"threshold_uncertainty_score":0.009883285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02939592142378723,"score_gpt":0.2394061072423834,"score_spread":0.2100101858185962,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}