{"id":"W2914538875","doi":"10.1016/j.gene.2019.01.022","title":"A comprehensive analysis of chimpanzee (Pan troglodytes)-specific LINE-1 retrotransposons","year":2019,"lang":"en","type":"article","venue":"Gene","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Brock University","funders":"Dankook University","keywords":"Retrotransposon; Biology; Genome; Genetics; Genome evolution; Evolutionary biology; Human genome; Primate; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000379913,0.00009506859,0.000263512,0.00002621179,0.00005646268,0.00001340734,0.0001662274,0.0000596229,0.001932569],"category_scores_gemma":[0.000003064786,0.00003848511,0.0002289541,0.0009771915,0.00002569047,0.00002493166,0.00002643807,0.00005255865,0.00008544174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001018904,"about_ca_system_score_gemma":0.000004776931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001005653,"about_ca_topic_score_gemma":0.0001849413,"domain_scores_codex":[0.9992247,0.0000307246,0.0002013881,0.0002237693,0.0001534937,0.0001659317],"domain_scores_gemma":[0.9996186,0.00007784833,0.00007273211,0.00009373282,0.00008032866,0.0000566994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001430456,0.00006181098,0.02525566,0.000002514256,0.0001741978,6.089721e-7,0.00006154698,0.0001741739,0.9678822,0.0001712722,0.00003388503,0.006167837],"study_design_scores_gemma":[0.0001604747,0.000236278,0.9442044,0.000004553069,0.0001711678,0.000001422363,0.0000841529,0.0004312964,0.04265988,0.0001744982,0.01174121,0.0001306996],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981251,0.0003750258,0.00001676988,0.0004525358,0.00006818413,0.0001507159,0.0002794974,0.0000256371,0.0005064802],"genre_scores_gemma":[0.998927,0.00009157362,0.0003663591,0.0000751686,0.0001001436,0.000005299315,0.0002462541,6.059059e-7,0.0001875784],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9252223,"threshold_uncertainty_score":0.9989798,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02296216984877737,"score_gpt":0.2197900448105972,"score_spread":0.1968278749618198,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}